Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1054 ATGAACACACCAAAGCTAAACCTGGATAAGGTGAAAGCAGTGAAAATATTAGGCAAAGGTGCAATGGGCACTGTTTTCCTCGTGGAAGAAACCACCACCAACTCCTTCATGGCACTGAAGGTCTTCGATAAAACATTCACTCACTCGCACCACCACGCCGACCACCGTGCCCGTTGGGAAATCCAAGTCCTTTCTCGCTTGTCACACCCTTTCTTACCTTCCCTTTTGGGTACCTTTGAAAATGACCACTTCCTAGGGTGGGCCTTACCTTACTGTCCCGGCGGCGACCTCCACCACCTCCGTTACCAACAAACTGATCACGTTTTTTCAACCACCGTCATCAGATTTTACCTCGCTGAGATTCTCTGTGCTCTTGACCACCTTCATTCCATGGGCATCGCATATCGTGATTTAAAACCCGAAAATGTCCTCATTAACTGTTCCGGCCACGTCACTCTCACCGATTTCGATCTCTCTCGTAATCTCTCTCCAGATACAAAACCCATTGACATTGATGATGGTTATCTCAAACACTCTCTGAATAGTGAAACCTATAAGATCTCGAAATATTCTAGGTGGACCCCACAACTAAAGGAAAAGAAGGCTAACTCGGCGCGAGTCAACCCGGTGAGTCGGAGGAAGAACGGCGAGAGGTCAAATTCGTTCGTCGGAACTGAGGAGTACGTGTCGCCGGAGGTAGTTTGCGGCGAGGGGCATGAGTTCGCGGTGGATTGGTGGGCCCTTGGGGTATTAAGTTACGAGATGTTGTACGGTACGACGCCGTTTAAGGGGAAGAATAGGAAGGAAACGTATCGAAACGTGGTTTTTAAGGAACCAGAGTTTGTGGGGAAGAAAACGGCGTTAACGGATTTGATTGAACGGTTGTTGGAAAAGGACCCTGTGAAACGGTTGGGTTACGTACGAGGTGGTTGTGAGATTAAGGAGCATGAGTTCTTCAAAGGGGTTAAGTGGGACCTACTCACGGAGGTTGTACGGCCACCGTTTATTCCGTCAAGAGAAAACGACGTAGGCCGTGTTGGACAAGATATAAGGGAGTACTTTCAGGAGTTGAAATCGCCGCCGCCGTTACCCCATTCGCCGTTATCGTCATCGGAGTCTCAGAATGTTTCATTCGCTGAATTCTGA 1146 0.486 MNTPKLNLDKVKAVKILGKGAMGTVFLVEETTTNSFMALKVFDKTFTHSHHHADHRARWEIQVLSRLSHPFLPSLLGTFENDHFLGWALPYCPGGDLHHLRYQQTDHVFSTTVIRFYLAEILCALDHLHSMGIAYRDLKPENVLINCSGHVTLTDFDLSRNLSPDTKPIDIDDGYLKHSLNSETYKISKYSRWTPQLKEKKANSARVNPVSRRKNGERSNSFVGTEEYVSPEVVCGEGHEFAVDWWALGVLSYEMLYGTTPFKGKNRKETYRNVVFKEPEFVGKKTALTDLIERLLEKDPVKRLGYVRGGCEIKEHEFFKGVKWDLLTEVVRPPFIPSRENDVGRVGQDIREYFQELKSPPPLPHSPLSSSESQNVSFAEF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1054 381 ProSiteProfiles AGC-kinase C-terminal domain profile. 320 381 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lal10g1054 381 SMART serkin_6 11 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g1054 381 Pfam Protein kinase domain 13 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g1054 381 Pfam Protein kinase domain 214 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g1054 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Lal10g1054 381 PANTHER FLIPPASE KINASE 1-RELATED 6 362 - -
Lal10g1054 381 Gene3D Phosphorylase Kinase; domain 1 14 342 - -
Lal10g1054 381 SUPERFAMILY Protein kinase-like (PK-like) 5 374 IPR011009 -
Lal10g1054 381 MobiDBLite consensus disorder prediction 357 381 - -
Lal10g1054 381 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 6 362 - -
Lal10g1054 381 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Lal10g1054 381 Gene3D Transferase(Phosphotransferase) domain 1 96 338 - -
Lal10g1054 381 ProSiteProfiles Protein kinase domain profile. 11 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1054 Lal-Chr10 17566341 17567486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1054 6 381 AGC Kinase Gene Family AT1G51170 58.040 9.32e-150 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lal10g1054 Pkinase 6.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1054 - K08286 lang:109363243 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1054 10 17566341 17567486 Lal10g1054 10 17566341 17567486 ECH
Lal10g1054 10 17566341 17567486 Lal1g0296 1 1767374 1768597 PCT
Lal1g0296 1 1767374 1768597 Lal10g1054 10 17566341 17567486 PCT