Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1053 ATGGATCATGACAATTCTGGATGCCAAGCTCCCCCTGAAGGTCCTGTATTATGCATCAACAACTGTGGATTTTTTGGGAGTGCAGCTACAATGAACATGTGTTCTAAGTGCCACAAAGACATGATGCTGAAACAGGACCAGGCCAAACTTGCAGCATCATCCATTGGAAATATTATGAATGGATCATCAAGCAGCAGTGCAAGTGAACCTGTTGTAGCTGCTAATGTGGACATCCCTGTCAATTCAGTAGAACCTAAAACTATCTCCGTACAACCTTCACTTGCTTCAGCCTCAGAGGGGAGTGTTGAGGCAAAGCCTAAGGGTGGTCCAAAACGTTGCGACAGCTGCAATAAGCGAGTTGGTTTGACAGGATTCAATTGTCGATGTGGTAACATTTTCTGTGCTTTACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCGCACTGCTGGACGGGATGCCATAGCTAAGGCAAACCCGGTTGTTAAGGCCGAGAAGCTTGAGAAGATCTAG 519 0.4566 MDHDNSGCQAPPEGPVLCINNCGFFGSAATMNMCSKCHKDMMLKQDQAKLAASSIGNIMNGSSSSSASEPVVAANVDIPVNSVEPKTISVQPSLASASEGSVEAKPKGGPKRCDSCNKRVGLTGFNCRCGNIFCALHRYSDKHNCPFDYRTAGRDAIAKANPVVKAEKLEKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1053 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Lal10g1053 172 Gene3D - 88 168 IPR035896 -
Lal10g1053 172 MobiDBLite consensus disorder prediction 91 111 - -
Lal10g1053 172 Gene3D - 3 71 - -
Lal10g1053 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Lal10g1053 172 Pfam A20-like zinc finger 17 39 IPR002653 GO:0003677|GO:0008270
Lal10g1053 172 SUPERFAMILY AN1-like Zinc finger 104 167 IPR035896 -
Lal10g1053 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 172 - -
Lal10g1053 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Lal10g1053 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Lal10g1053 172 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 1 172 - -
Lal10g1053 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Lal10g1053 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1053 Lal-Chr10 17558941 17559459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1053 8 172 C2H2 Transcription Factor Family AT3G52800 44.848 6.14e-39 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1053 - - gmx:100499857 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1053 10 17558941 17559459 Lal10g1053 10 17558941 17559459 ECH
Lal20g0241 20 1708095 1711427 Lal10g1053 10 17558941 17559459 ECH
Lal1g1703 1 19482788 19483306 Lal10g1053 10 17558941 17559459 ECH