Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1050 ATGACTGATCCCTACAGCTCCAATGACCTCAATGGTTGTTTTGACCTAAATTCTCCCAACCTTTTCTCATCATCATCTTGTTCCAACCCACCATTCTATTTCCCTTCTAGTTATCATCATCATCATCATAACATCACAAGTGGCATGATCTCTTTTACTCATCATCATATGAATCAGCATGATCCTTCTTCTTCTCCTCCTCCAAGAGAAGTTCTTCCTCTCCTTAACCTAAGCCCTACAAGACATGGTGAAGATCTTGAAACTTCCTTTAGTTCTATGGAAGTGGACAACAACAACAACAACAAAAAGAACAAAGAAAAACCTATAAGCTTTTTGGATCATGAGGATACTACTGTCACTGTAGCTTTGCACTTAGGGCTTCCAAGCACAAGTACAACTTTAACTGATTTAGCTTCTTCAAACATATTCACTACAGAGATTCCAGAGAAAGATAATGAAAAGGTTACTGTTGATTCTTCTTCTGAGTATCCATCATCAAGTAGAATTAGTAGGGGTCAGTTTTGGATCCCTACCCCATCTCAAATTCTGATTGGTCCAACACAGTTTCCATGTCCCCTTTGTTTCAAAACGTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAATCTCTAAGAGGAACACAACCAACAGCAATGCTTAGACTCCCTTGTTATTGCTGTGCACCAGGATGCAAGAACAACATTGATCATCCAAGAGCAAAGCCACTCAAAGACTTTAGAACCCTTCAAACTCATTACAAGAGAAAGCATGGAATCAAGCCTTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTTAGAGGTGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTATGGTATTGCTCTTGTGGTTCTGACTTTAAGCATAAAAGATCTCTTAAGGATCATATTAAGGCATTTGGAAATGGACATAAAGCTTATGGAATAGATTGTCTTGATCAAGATGATGAAGGTGGCTCTGAAATTGAGCAAGAAAGTGAGTCCCTTCATTTATAG 1056 0.3902 MTDPYSSNDLNGCFDLNSPNLFSSSSCSNPPFYFPSSYHHHHHNITSGMISFTHHHMNQHDPSSSPPPREVLPLLNLSPTRHGEDLETSFSSMEVDNNNNNKKNKEKPISFLDHEDTTVTVALHLGLPSTSTTLTDLASSNIFTTEIPEKDNEKVTVDSSSEYPSSSRISRGQFWIPTPSQILIGPTQFPCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDCLDQDDEGGSEIEQESESLHL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1050 351 MobiDBLite consensus disorder prediction 82 98 - -
Lal10g1050 351 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Lal10g1050 351 SUPERFAMILY beta-beta-alpha zinc fingers 255 293 IPR036236 -
Lal10g1050 351 PANTHER ZINC FINGER PROTEIN WIP2 1 348 IPR043584 GO:0003700|GO:0010468
Lal10g1050 351 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 348 - -
Lal10g1050 351 MobiDBLite consensus disorder prediction 55 108 - -
Lal10g1050 351 Gene3D Classic Zinc Finger 188 211 - -
Lal10g1050 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 216 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1050 Lal-Chr10 17541850 17544935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1050 1 344 C2H2 Transcription Factor Family AT1G51220 58.543 7.48e-128 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal10g1050 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1050 - - gmx:100789416 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1050 10 17541850 17544935 Lal10g1050 10 17541850 17544935 ECH
Lal20g0246 20 1743025 1745994 Lal10g1050 10 17541850 17544935 ECH
Lal1g1700 1 19447748 19450702 Lal10g1050 10 17541850 17544935 ECH
Lal11g1321 11 16807091 16809747 Lal10g1050 10 17541850 17544935 ECH
Lal25g0391 25 2631289 2634125 Lal10g1050 10 17541850 17544935 LSH