Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1046 ATGGCAGATCAAAATCATCCTCCCTCTTCAAGCATGGTGATTGATGCTGTTGCAGGTTCTTCTTCTTCCTCTTCATATCATCGTACCCATCCACGAAAGAAACGCACTACCATGATCACAATGCTCCATGACAACAACAACATTGTCAAAACAAACAAGTACGGTGGTGGAAAGAAACAAGCAGATTCGGGGGCACCTAAGATTACACCACCTTGCACCGAATGTGGTAAAAAGTTCTGGTCTTGGAAGGCTTTGTTTGGTCACATGCGATGCCACCCTGAGCGTCAATGGCGTGGTATTAATCCTCCTCCAAACATCATACCCCGACAACCTCAGATATTGACTGATGAGGATCACGAGGTTGCTGCTTCTCTACTCTTGCTTGCAAAGGGCAAAGGCAAGGTTATTGTTAAAGAAGATACTATGATTAATGTTAATTATGGGATTCTCTCACCCAACTTGAGTCTAGTTTCGAGCCAAGACGAGCGATTCGTGTGCTCGAGTTGCAAGAAAGTGTTTGGTTCACACCAGGCTCTAGGAGGACATAGGGCTAGTCACAAGAATGTTAAGGGCTGTTTTGCAATCAATGTTGGTGAGGATCATGTCAATATTATTCATAATAATCATAGTCATGATCATAGTGGAGGAGGTGCTACAACTACAAGTAACAATGATAATGAACAACAGCAGCAACAGAATCAGCATATGGATGGAGAGGGACACAAATGTAGCATTTGTCTGAGGGTGTTCTCAACAGGACAAGCACTGGGTGGTCACAAGAGATGTCACTGGGAAAACAAGCCACCAACAAATAATGTTCTTGCTCTTCCTCTTGACTTGAATTTCCCTCCTCAGGAACAAGAACAACCACCTCTCAATTTGGATTTGAGGTTGAGACTATAA 903 0.4341 MADQNHPPSSSMVIDAVAGSSSSSSYHRTHPRKKRTTMITMLHDNNNIVKTNKYGGGKKQADSGAPKITPPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNIIPRQPQILTDEDHEVAASLLLLAKGKGKVIVKEDTMINVNYGILSPNLSLVSSQDERFVCSSCKKVFGSHQALGGHRASHKNVKGCFAINVGEDHVNIIHNNHSHDHSGGGATTTSNNDNEQQQQQNQHMDGEGHKCSICLRVFSTGQALGGHKRCHWENKPPTNNVLALPLDLNFPPQEQEQPPLNLDLRLRL 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1046 300 MobiDBLite consensus disorder prediction 1 35 - -
Lal10g1046 300 Gene3D Classic Zinc Finger 70 186 - -
Lal10g1046 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 191 IPR013087 -
Lal10g1046 300 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Lal10g1046 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Lal10g1046 300 MobiDBLite consensus disorder prediction 209 237 - -
Lal10g1046 300 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Lal10g1046 300 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 14 299 - -
Lal10g1046 300 SMART c2h2final6 70 92 IPR013087 -
Lal10g1046 300 SMART c2h2final6 241 263 IPR013087 -
Lal10g1046 300 SMART c2h2final6 164 186 IPR013087 -
Lal10g1046 300 MobiDBLite consensus disorder prediction 205 237 - -
Lal10g1046 300 MobiDBLite consensus disorder prediction 1 26 - -
Lal10g1046 300 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 14 299 - -
Lal10g1046 300 MobiDBLite consensus disorder prediction 281 300 - -
Lal10g1046 300 Pfam C2H2-type zinc finger 163 187 - -
Lal10g1046 300 Pfam C2H2-type zinc finger 72 94 - -
Lal10g1046 300 Pfam C2H2-type zinc finger 241 265 - -
Lal10g1046 300 ProSitePatterns Zinc finger C2H2 type domain signature. 166 186 IPR013087 -
Lal10g1046 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
Lal10g1046 300 SUPERFAMILY beta-beta-alpha zinc fingers 239 269 IPR036236 -
Lal10g1046 300 SUPERFAMILY beta-beta-alpha zinc fingers 71 186 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1046 Lal-Chr10 17519808 17520710 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1046 23 300 C2H2 Transcription Factor Family AT4G35280 46.128 4.59e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal10g1046 zf-C2H2_6 1.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1046 - - lang:109342958 529.25