Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1024 ATGAATAAACCTAGTATTACCCTTTTGGCTCTGTGTGTCTTATTCTTCCATCATGTTAGAGCACAAAACACTTCAGATGATGCTGTCTCTAATTTCCAACCAAGCCTTGTTGTTGTTATAGCAGTCCTTGGCCTTATGTTTTCATTGACATTCATTCTTCTCATGTATGCCAAATTCTGTCAAAGAAATACTTCAGTTCCTGTCTTAGACACAGAAAACCAACCAACACTAGTGAGATCAAGGTCTAGGTTCTCAGGAATTGACAAAACAGTCATAGAATCACTTCCATTCTTTAGATTTTCTTCCCTCAAAGGGTCAAAAGAAGGTCTTGAATGTGCAGTGTGCTTATCAAAGTTTGAAGATATAGAAATTCTGAGGCTGCTACCAAAGTGCAAGCATGCTTTTCATACTGATTGCATAGATCACTGGCTTGAGAAACACTCAAGTTGTCCTATTTGTAGACACAAGGTTAATCCTGAAGACCAAACAATCTTCACATATTCAAACAGTTCAAGGTTGCAAGCAAATCCTTCAGGACTAGGTGAAGAATCTAGTAACATAGAGCTCTTTGTCCAAAGAGAGGAACAACAACAACAACAACAACAACAACAACATGGTTCATCAAGGTTTAGTATTGGAAGCAGCTTCAGGAAAATAATTGGAATGGATATTAAGGAAGAAGAGTTGTTTATCCAAAAAGAAATAGAAGAAGATAGTGACAAGGGTTATCATAAGCATAACCATAAGATTACTATATCTGATATTGTGTTCAAGCATAGGTGGAGCAATGTTAGCTCTTCAGACCTTATGTTTTTGAATACTGAGATGCTTAATGCTAATTCAAGCAACAGATTCAATGACTTGGAATCAAGTTCTGAATTTATGGCTAAAAGGGTGGTTGAAAATGAGCAAATTATGAACATCAATGATGATATAGAGAGGAAGGTTTCATTTGAGAGCAAAGTTGGTCCATCAAACAAGGATAAATCAGTTTCAATTTCAGATGAGGATCCTCTTTTTGCAACATCATATTATTCTGCAGGAAATTCAAGTCATGCACCAAAGTATATGAACCAAGGTGAGAAAAGATCAATGTCAGAAATCACTGGTGTATCTAGATTTGGAGGTTTAAGCATGAAAAATAAGGTGTTTAGAGATTCTTCTTTGTTTGAAAACAACCTTAAAAGGGAAAGAATGAGACAGCTTTGGTTTCCAATTGCCAGAAGAACAGTTCAATGGTTTGTGAATAGAGAAACAAAGTCTCAGCAATCTCAGAATAAACAAAACTCATTAGATGTATAG 1302 0.3587 MNKPSITLLALCVLFFHHVRAQNTSDDAVSNFQPSLVVVIAVLGLMFSLTFILLMYAKFCQRNTSVPVLDTENQPTLVRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHTDCIDHWLEKHSSCPICRHKVNPEDQTIFTYSNSSRLQANPSGLGEESSNIELFVQREEQQQQQQQQQHGSSRFSIGSSFRKIIGMDIKEEELFIQKEIEEDSDKGYHKHNHKITISDIVFKHRWSNVSSSDLMFLNTEMLNANSSNRFNDLESSSEFMAKRVVENEQIMNINDDIERKVSFESKVGPSNKDKSVSISDEDPLFATSYYSAGNSSHAPKYMNQGEKRSMSEITGVSRFGGLSMKNKVFRDSSLFENNLKRERMRQLWFPIARRTVQWFVNRETKSQQSQNKQNSLDV 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1024 433 Pfam Ring finger domain 111 154 IPR001841 -
Lal10g1024 433 SMART ring_2 112 153 IPR001841 -
Lal10g1024 433 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Lal10g1024 433 SUPERFAMILY RING/U-box 91 160 - -
Lal10g1024 433 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 428 - -
Lal10g1024 433 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 428 - -
Lal10g1024 433 CDD RING-H2_PA-TM-RING 111 154 - -
Lal10g1024 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 163 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1024 Lal-Chr10 17396980 17398281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1024 27 429 C3H Transcription Factor Family AT4G28890 44.941 6.24e-105 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1024 K10664 - gmx:100803207 565.844