Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1020 ATGTCTGTGCCATTAGTGCAAGGCTATGTAGAAGTTCCTGTTATGGAAAAAACCTCTGAAAAGTTTTCTCAGATAAATAAAACCACCACCAGAAGTTGCTTAAACCTTAAGGCTACTGAACTAAGATTAGGCTTACCTGGTTCTGAGTCACCAGAGAGAAATGAGAATAATGTTATGTACCCTTTAAGCCTGCACAACAAGTGTTTGGTGTCTGGTGCCAAAAGGGGTTTCTCAGATACCATTGATGGTGGTTCTGGCAAGTGGCTTCTATCTGGAAATGAAGATTCTGAGGTGGGTATGGGTAAAGATGGTAACTTGTTCTCTCCTAAGTGTGTTATTGCTGCTAAGGCTCTTGTTGGAGCTGAGTGTAGTAACCAACAAAAAGTAGCTGGTGTGAAAGATAAAGTTCCTCACTCATCAAAGACATTGAATGAGAAGAAGCCTCAGATATCTGCTACTGCTGCAAAGGAACAAGTTGTAGGATGGCCACCAATCCGATCTTTCAGGAAGAACTCAATGGCTACTCAGCCTCAAAAGAATGACGATGATGCCGAAACCAAGTCTGGTTGCCTTTATGTAAAAGTCAGCATGGATGGTGCTCCTTATTTGAGGAAAGTGGATCTCAAAAACTTCGGCACTTACAGAGAACTATCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCACCTCGGGTCAGATGGCTCCATCAGCTGAGAAAACTTATAGGAGTGCTATGAATAGGTCTATTAGTAGTGTTACAGAGATGGCCATAAGCGATCTCTCCCGAGAGTTTAAGCCTACACAATGCACACAAGCCCATCTTTACTATGTAATGAAATTCAACTTTGGGCAGCAAAAATCGATTGTTAGACGAGATGGTCAATGTGGCTCTTATAAGTTGAGTGAAAGCAGATTGATGAACCTTCTCCATGGTTCAGAATATGTGCTCACTTATGAAGACAAAGATGGTGATTGTATGCTAGTTGGAGATGTTCCATGGAAGATGTTCACTAACTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCTAGAGCCATGGAAAAGAGCAAAAGTGGCAACTAG 1107 0.4155 MSVPLVQGYVEVPVMEKTSEKFSQINKTTTRSCLNLKATELRLGLPGSESPERNENNVMYPLSLHNKCLVSGAKRGFSDTIDGGSGKWLLSGNEDSEVGMGKDGNLFSPKCVIAAKALVGAECSNQQKVAGVKDKVPHSSKTLNEKKPQISATAAKEQVVGWPPIRSFRKNSMATQPQKNDDDAETKSGCLYVKVSMDGAPYLRKVDLKNFGTYRELSSALEKMFSCFTITSGQMAPSAEKTYRSAMNRSISSVTEMAISDLSREFKPTQCTQAHLYYVMKFNFGQQKSIVRRDGQCGSYKLSESRLMNLLHGSEYVLTYEDKDGDCMLVGDVPWKMFTNSCKRLRIMKSSEAIGLAPRAMEKSKSGN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1020 368 MobiDBLite consensus disorder prediction 134 156 - -
Lal10g1020 368 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 294 360 IPR003311 GO:0005634|GO:0006355
Lal10g1020 368 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 231 IPR003311 GO:0005634|GO:0006355
Lal10g1020 368 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 294 360 - -
Lal10g1020 368 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 17 231 - -
Lal10g1020 368 ProSiteProfiles PB1 domain profile. 190 350 IPR000270 GO:0005515
Lal10g1020 368 SUPERFAMILY CAD & PB1 domains 187 231 - -
Lal10g1020 368 Pfam AUX/IAA family 39 241 IPR033389 -
Lal10g1020 368 Pfam AUX/IAA family 293 359 IPR033389 -
Lal10g1020 368 SUPERFAMILY CAD & PB1 domains 279 349 - -
Lal10g1020 368 Gene3D - 184 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1020 Lal-Chr10 17369097 17375552 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal10g1020 AUX_IAA 1.1e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1020 K14484 - fve:101311700 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0383 8 2558377 2568044 Lal10g1020 10 17369097 17375552 LSH
Lal25g0428 25 2903576 2908285 Lal10g1020 10 17369097 17375552 LSH