Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1017 ATGACTTCCGCCGTAACTGTCGCATCTATCCTCCGTCACACCACCATCTTCCTCTCTGACGTCGTTTCGCAACACGAACTCCGGCACCACCTCATCACCACTCTCCAAACCTCAACCACTCCACTCTCCGGCAATGAAACCACCGTCAAACTTGCCATCGACACTCTCGAAGCTGCTATATCCTTCTCCACCGTACCTTCCGCCCGATCCTCTTCCCTCTCTCTGGCGGAGAAGCTTCTCATTCCTCTCCCTCAACATCCTCTCTCTTCCTTCCTTCTCTCTCTCACTCTCACACTCTGTAACCGCCATATCGATGCCGCTATTCCCCTCCTTCGTATATTCCAATCCTTTCCTTCTCTTTCCCGGTCTGAATTCGCTCCACTTCTCTTCGATCGCCTCTTCTCTTTCCATCTCGTTCCCGTTTTTCGAAGGTTCCATGATCGAAGAGCGCAGATTTTGTCGTCGAATTCGAGCGTAAAGAGCAATTGTGACATGGTATCATTGACCAAGGTGAGCGAGGATCAGGCTTTGAAACTGAGGGACCTGGAGAGGGAGTATGAAGAGGTTCTCGATACGAATTGTAAGGTTTTTGCAGTTTACTTCGGAGAGGTTCTAATGAGTGATGATGGAGGCATGTCAATTAGTCCACCAGCGTTGGCTATGAGGAGCTTCGGAAATGGTGACAAAACAGAGAGCGATGAGGAGGTGATGGAGGAAATCAAAACGCCTGAGTTGAAGAACAAACGATATAATCCAATATGGACCGAAAGGGAAACATCCATCGATTTTTTAAGAAATAGTTCTAGCAGCAACAGTTCCCTCTATGTACCATTTTATCCTGAAAGAGTCTCTCCTAGACTCCTCAAACCCCAAAAATCTCCAGAAAAATTGAAATCACCAGTCTATTTAAAATCAACTGCAGAACCCAATTCTTATTTGGATAAGAATTTGCACTGTTCTTCTTCAGAATCTGAGGTGGATAGTGAGGTATTTTATACTGCCAATAGGAAAACAAACCCAATGAGGACTGAAAGCAAATATTTGCATATACCTTTTTATCCTGACTCAACCAGAATTCTCGAACCCCAAAATTCTTCAGAAAATTTGACAGTGCCACTTCACTTAAACTCAGATGCTGAACCCTACTCATCATTAGATGACAATTTGCCTTCTTCATCTTCAAAATTTGAAGCAAAAAGTGAGGAAAAGGATGAAAATATGGTGCTGTTGGAGTCTCAGCAGGGCCAAATCCATTTGCAAACCAATTTTACAGAACTCATGGGTTCCTCGGGTTATCCCATGTCTGGCTACAATAGCCCACCACAAGGAAGTTATAAACAAGCACCACCCGATGACTTTGTTTGTCCAATAATCAGTAACCTGTTTGATGATCCAGTGACCCTTGAGACAGGTCAATCATATGAACGTCGAGCTAGGGAAAAATGGTTCAATATAACTAAAACAAATTATGTGCTCAAACAACTAATTGAAAGCTGGAAAGAGAAAAACCTCGACTCGGGTGAGATTCCATATGAAGATGCTGAGCTGGTAGTGCCATCACTAATGACTTCAACTTCTCCTAACAGTGCTATATCACGAGACATAGGTCATGAAAAAAGTGAATTACATCATGCAGTGAACAACCTGCTTATGTCAGAGGTTCTTGAGGAATCTGAAATGGCTGTGCTTCAAATTGAGAAGTTGTGGAGAGAAGAAGTGAATCAAAGAGGTGATATCCAGACAATGCTATCAAAACCTCCAATCATCAATGGGTTTATGGTGATTCTTTTTTACTCTGTTGATCCAAAGGTGCTACAAGCAGCAGTTTTCCTACTGACAGAGATGGGTTCAAGAGACAGTACTGTTATTGAGACTCTTACACGGGTGGGCACTGATGTAGAATGTATCATGGCTCTTGTCAAGAAAGGATTGGTAGAGGCTGTTGTGTTGATATACCTCCTAAAACCTTCCACTATGAGTCTTACAAAGATGGTGGTAGTGGAGGATCTCGTAACAGTTCTCGATAAGGAGGAAGGAGAGTTGCTTGAGATGTCTATAAATCCCAAAACAGCTGCAGTACTTTTACTAGCACAGGTTATTGGAAGCAGTGATGAAGAAACTGTATCTTCAGTTGTCAAGTCTGTAGTATTCTCTGAAAAAGCAATTGGGACTGTTGTTGGCAGTTTGGGGGCTGAGTGGGTTGATGAGAGGATTGCTGCAGTTGAGATCTTATTGAAATGCATACAAGAAGATGGGACTTGCAGGAATTTCATTGCTGATAAAGCAGAACTATCCACTATTTTAGAATGCTTCATATGTGCAACTGACAAAGAACGTTTTAAGATAATTCAGTTTTTTTCTGAGTTGGTCAAATTAATTAGGAGGACATATAATGAACAAATCCTTAACATTATAAAGGATGAAGGTTCTTTCAGTACAATGCATACTCTCCTCACTTATCTGCAGACAGCCCTTCAAGACCAGTGTCCAGTAGTGGCTGGCTTCTTACTCCAACTTGATCTTCTGGTAGAGCCAAAAAAGAAGAGCATATACTGTGAAGAGGCTATAGATACACTTATTTCGTGCCTGAGAAACAGTGATTTCCATGTTGTCCAGTTAGCAGCTGCTGAGACAATAGTTTCATTGCAAGGGAGATTCAACTTAATTGGAAAACCACTTGCCAGAGAAGTGCTTCTTGAACGTGCCGGTCTTGACACCAGCTATAGAAGCCTTATACAGATGGATCAGATCAACAATTTCTGCGAAGGAATTAAAGAATCTATTAAAGAAGAGACTGCCGCTGATGAATGGGAAAGAAAAATTGCATATGCTCTAGTTAGCCATGACTCTGGTATACTTTTTGAGGCTTTAGCAGATGGCTTGATGAAGAGCCAAAGTGCAGAACTAAGTGCAGCATGCTTTATATCAGCTACATGGCTCATATACATGCTCACTATTCTACCAGATACAGGAATACAAGGGGTAGCCCGTGTCTGCTTTCTCAAGCGTTTTGTATCAATAATAAAATCTGCTGTGGATATAGAGGACAGAATCCTTTCAATGCTTGCTCTAAAAAGCTTTCTTCACTTTCATGATGGCTTACATGAACTAACTTCCTATGCAAAGGATATTTTAAAAGCATTGCGGGAGCTAAAGAGATTCTCCCCCATGGCATCTGAAATGATGAAGGTTCTGGTTAAAGAAAATGAACCTAAAGCAGAAATCTGGATACATAAAGAGCTAATTCAAGTAGATTGCAAAGAGAATGGACAAGTGTTGTCTGTCATTTTCTCAAAAGAAAAACTTTTCTCTGGTCATTCAGATGGAACTATTAAGGTCTGGAAAATACAGGATAGCTTAATACATCTCTTGCAAGAGACTCAAGAACATATGAAGGATGTTACAAGCTTGGCAATTTCAGAATCTGGTGACAGACTATACAGTGGTTCGCTTGATCGAACATTAAAGGTCTGGTTCATTGGAAAGGCAGGGATACATCATATACAGGTGCACGATATGAAGGACCATATTCATAATTTAGTTGTAACTAGCAGCATGTGTTGCTTCATTCCTCAAGGCACTGGTATAAAGGTTCTACCATGGAATGGAGAATCAAAGTTGTTGAACTCTAATAAATATGTGAAGTGCATGACTGGTGTTGATGGGAGATTATACTGTGGGTGCCAAGACAATAGTGTTCAGGAAGTAGATTTGGCCAAAGGAACATTCAGTACCATCCAATCCGGTTCCAAAAAATTACTTGGGAGAGCAAATCCTATTCATGCACTGCAAGTTCATGGTGAATTTATTTATGCTGCTAGCTCTTCCTTGGATGGATCTGTTATAAAGATATGGAACACATCCAATTACAGTGTGGTTGGATCACTGCAAACTACATTGGAAGTGCGAGCTATGTTAGTAGGCTCAGAGTTAATTTATTTGGGGTGCAAGGGAGGAGCTGTGGAAATTTTGGATAGGAAGAAACACAATAGAGTTAACACAATAATGATGGGTACTAGTTCTAAAGTTCTCTGCATGGCTTTAGATAGCAATGAAGAAATTTTGGTGGTTGGAACTCCTGATGGCCAAATTCAGCATGTTCATGCACTTGAGTTTTCAAATGGAATGGAAAAGAAACTGGAACTTTGCGGCATGGGGGATCAAATGAAAGAGTACTGCTCCATTGGTACATGA 4194 0.4125 MTSAVTVASILRHTTIFLSDVVSQHELRHHLITTLQTSTTPLSGNETTVKLAIDTLEAAISFSTVPSARSSSLSLAEKLLIPLPQHPLSSFLLSLTLTLCNRHIDAAIPLLRIFQSFPSLSRSEFAPLLFDRLFSFHLVPVFRRFHDRRAQILSSNSSVKSNCDMVSLTKVSEDQALKLRDLEREYEEVLDTNCKVFAVYFGEVLMSDDGGMSISPPALAMRSFGNGDKTESDEEVMEEIKTPELKNKRYNPIWTERETSIDFLRNSSSSNSSLYVPFYPERVSPRLLKPQKSPEKLKSPVYLKSTAEPNSYLDKNLHCSSSESEVDSEVFYTANRKTNPMRTESKYLHIPFYPDSTRILEPQNSSENLTVPLHLNSDAEPYSSLDDNLPSSSSKFEAKSEEKDENMVLLESQQGQIHLQTNFTELMGSSGYPMSGYNSPPQGSYKQAPPDDFVCPIISNLFDDPVTLETGQSYERRAREKWFNITKTNYVLKQLIESWKEKNLDSGEIPYEDAELVVPSLMTSTSPNSAISRDIGHEKSELHHAVNNLLMSEVLEESEMAVLQIEKLWREEVNQRGDIQTMLSKPPIINGFMVILFYSVDPKVLQAAVFLLTEMGSRDSTVIETLTRVGTDVECIMALVKKGLVEAVVLIYLLKPSTMSLTKMVVVEDLVTVLDKEEGELLEMSINPKTAAVLLLAQVIGSSDEETVSSVVKSVVFSEKAIGTVVGSLGAEWVDERIAAVEILLKCIQEDGTCRNFIADKAELSTILECFICATDKERFKIIQFFSELVKLIRRTYNEQILNIIKDEGSFSTMHTLLTYLQTALQDQCPVVAGFLLQLDLLVEPKKKSIYCEEAIDTLISCLRNSDFHVVQLAAAETIVSLQGRFNLIGKPLAREVLLERAGLDTSYRSLIQMDQINNFCEGIKESIKEETAADEWERKIAYALVSHDSGILFEALADGLMKSQSAELSAACFISATWLIYMLTILPDTGIQGVARVCFLKRFVSIIKSAVDIEDRILSMLALKSFLHFHDGLHELTSYAKDILKALRELKRFSPMASEMMKVLVKENEPKAEIWIHKELIQVDCKENGQVLSVIFSKEKLFSGHSDGTIKVWKIQDSLIHLLQETQEHMKDVTSLAISESGDRLYSGSLDRTLKVWFIGKAGIHHIQVHDMKDHIHNLVVTSSMCCFIPQGTGIKVLPWNGESKLLNSNKYVKCMTGVDGRLYCGCQDNSVQEVDLAKGTFSTIQSGSKKLLGRANPIHALQVHGEFIYAASSSLDGSVIKIWNTSNYSVVGSLQTTLEVRAMLVGSELIYLGCKGGAVEILDRKKHNRVNTIMMGTSSKVLCMALDSNEEILVVGTPDGQIQHVHALEFSNGMEKKLELCGMGDQMKEYCSIGT 1397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1017 1397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 502 IPR013083 -
Lal10g1017 1397 SUPERFAMILY WD40 repeat-like 1089 1367 IPR036322 GO:0005515
Lal10g1017 1397 SUPERFAMILY ARM repeat 535 884 IPR016024 -
Lal10g1017 1397 Gene3D - 545 1052 IPR011989 -
Lal10g1017 1397 Gene3D - 1074 1211 IPR015943 GO:0005515
Lal10g1017 1397 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 341 - -
Lal10g1017 1397 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 349 1367 - -
Lal10g1017 1397 MobiDBLite consensus disorder prediction 377 403 - -
Lal10g1017 1397 ProSiteProfiles Trp-Asp (WD) repeats profile. 1127 1158 IPR001680 GO:0005515
Lal10g1017 1397 Pfam WD domain, G-beta repeat 1125 1158 IPR001680 GO:0005515
Lal10g1017 1397 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1127 1158 - -
Lal10g1017 1397 Gene3D - 1212 1387 IPR015943 GO:0005515
Lal10g1017 1397 SMART WD40_4 1328 1368 IPR001680 GO:0005515
Lal10g1017 1397 SMART WD40_4 1250 1286 IPR001680 GO:0005515
Lal10g1017 1397 SMART WD40_4 1117 1159 IPR001680 GO:0005515
Lal10g1017 1397 SMART WD40_4 1078 1115 IPR001680 GO:0005515
Lal10g1017 1397 Coils Coil 172 192 - -
Lal10g1017 1397 MobiDBLite consensus disorder prediction 381 395 - -
Lal10g1017 1397 SMART Ubox_2 452 499 IPR003613 GO:0004842|GO:0016567
Lal10g1017 1397 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 349 1367 - -
Lal10g1017 1397 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 341 - -
Lal10g1017 1397 SUPERFAMILY RING/U-box 439 503 - -
Lal10g1017 1397 Pfam U-box domain 450 484 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1017 Lal-Chr10 17338628 17348098 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1017 403 576 U-box Gene Family AT5G42340 29.016 2.08e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1017 - - lang:109342256 2459.49