Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1011 ACTCCTTCACCACCACCACTAGAGACTCCTTCACCACCACCAGCAGTGACACCTTCACCCCCACCACCACCAGCAGTGACACCTTCACCCCCACCACCACCAGGGACTCCTTCACCACCACCACCACCAGAGACTGCTTCACCACCACTACCACCAGGGACTCCTTCACCCCCACTACCACCAGGGACTCCTTCACCACCACCACCACCAAAGACTCCTTCAACTTCTCCTCCTCCATCTCCTTCCACCCGCGCCGGCCACACTCCTCCGCCAGCGCCGTCTCTGTCCTCCCCACCACCACCTCCGCATTCCCAGTCAACCCCATCGAAGCCATCTTCATCGTCCAGTTGGAACATCTCCACCGAAGCGGTGGCTGGAATAGCCGCTGGGGTGGTGGCGATACTGTTGTTAATAAGCATAATGTGCATGTGTTACAGAAAAAAGAAGAGAAGAAGAGATGAACAACAAGACTATTCTCCACAATATAAGGTTGAGTCATATGGTGTAGCCCTGCAACAAGTGCAACATAATGCTCCTCCTCCTTCAGACCATGGAGTCCAGGTGATGCCTAAGCCAATTCTTACACCTCCCTTTGTATCAAGTGGACAATCGTCGTCATCTTATGCTCCTGCTCTGCCTCCACCACCTCCACCTTTTATTAACAGCAGTGGCGGGTCTGGATCAAACTATTCACATGGTGAACCACATCCATCACCTCTTTCATTAGGCTTTGTGAAGAGTACTTTTTCGTATGAGGAGTTGGTGAAGGCGACGGATGGCTTCTCTGATGCCAACCTTCTTGGAGTTGGTGGGTTCGGGTATGTGCACAGAGGAATTCTTCCCAATGGCATGGAGGTAGCTGTGAAGCAGCTTAAGGTCGGAAGCAAACAAGGGGAGCGTGAATTTCAAGCTGAAGTTGAGATAATTAGCCGCGTTCATCATAAACATCTTGTTTCTTTGGTTGGATACTGCATCACTGGGATCCGGAGGCTGCTTGTTTACGAATTTGTTCCCAACAATACATTGGAATTCCATTTACATGGGGTAGGGAGACCTACAATGGGTTGGTCCACAAGAGTGCGAATTGCTGTAGGGTCTGCAAAAGGACTGGCATATCTTCACGAGGATTGTCATCCTAAGATCATACATCGTGATATCAAAGCTGCTAACATCCTTCTGGACTTCAACTTTGAAGCGAAGGTTGCTGATTTTGGGCTTGCAAAGATATCTTCTGATATTTATACTCATGTTTCTACTCGAGTAATGGGGACTTTTGGACTCATCAGTGATGCATCAACTGCTGCTTACAGGTACCTTGCTCCAGAATATGCTGCTACTGGAAAACTTACAGACAAATCCGATGTGTTCTCCTACGGAGTCATGCTTCTCGAGCTAATAACTGGAAAACAGCCAGTTGACTCGAATCGATCTGACACAGACAGTTTGGTAGACTGGGCTAGGCCTTTGCTCGAATGTTCTCTGGAAGAAGTTGATTTTGATTCTCTGACTGACCCAAGGCTCCAGAATGAATTCGATCCGAATGAGCTGGCTCGCATGGTGGCATGTGCTGCAGCTTGCATACGTCATTCAGCAAGACGTCGTCCAAGGATGAGCCAGGTCCTTCGTGCTCTGGAAGGCGACGTGTCTCTAGCAGATCTTAATGAAGGAATTACACGTGCATACAGTTCATATGGAAGCACAGATTATGACACCTCACCATACAGGGATGACATGAAAATTTTCCGAAATACGGCATACGGAGGAGGAACCCAGGGGTATGGTGCCAGCAGTGGTTACAGTGCAGCCAACAATAAGTGA 1818 0.4901 TPSPPPLETPSPPPAVTPSPPPPPAVTPSPPPPPGTPSPPPPPETASPPLPPGTPSPPLPPGTPSPPPPPKTPSTSPPPSPSTRAGHTPPPAPSLSSPPPPPHSQSTPSKPSSSSSWNISTEAVAGIAAGVVAILLLISIMCMCYRKKKRRRDEQQDYSPQYKVESYGVALQQVQHNAPPPSDHGVQVMPKPILTPPFVSSGQSSSSYAPALPPPPPPFINSSGGSGSNYSHGEPHPSPLSLGFVKSTFSYEELVKATDGFSDANLLGVGGFGYVHRGILPNGMEVAVKQLKVGSKQGEREFQAEVEIISRVHHKHLVSLVGYCITGIRRLLVYEFVPNNTLEFHLHGVGRPTMGWSTRVRIAVGSAKGLAYLHEDCHPKIIHRDIKAANILLDFNFEAKVADFGLAKISSDIYTHVSTRVMGTFGLISDASTAAYRYLAPEYAATGKLTDKSDVFSYGVMLLELITGKQPVDSNRSDTDSLVDWARPLLECSLEEVDFDSLTDPRLQNEFDPNELARMVACAAACIRHSARRRPRMSQVLRALEGDVSLADLNEGITRAYSSYGSTDYDTSPYRDDMKIFRNTAYGGGTQGYGASSGYSAANNK 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1011 605 MobiDBLite consensus disorder prediction 1 107 - -
Lal10g1011 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 381 393 IPR008271 GO:0004672|GO:0006468
Lal10g1011 605 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 9 587 - -
Lal10g1011 605 SUPERFAMILY Protein kinase-like (PK-like) 238 544 IPR011009 -
Lal10g1011 605 SMART serkin_6 261 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g1011 605 MobiDBLite consensus disorder prediction 199 236 - -
Lal10g1011 605 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 9 587 - -
Lal10g1011 605 ProSitePatterns Protein kinases ATP-binding region signature. 267 289 IPR017441 GO:0005524
Lal10g1011 605 Pfam Protein tyrosine and serine/threonine kinase 266 543 IPR001245 GO:0004672|GO:0006468
Lal10g1011 605 CDD STKc_IRAK 267 546 - -
Lal10g1011 605 PRINTS Proline rich extensin signature 2 23 - -
Lal10g1011 605 PRINTS Proline rich extensin signature 26 42 - -
Lal10g1011 605 PRINTS Proline rich extensin signature 45 62 - -
Lal10g1011 605 Gene3D Transferase(Phosphotransferase) domain 1 337 556 - -
Lal10g1011 605 ProSiteProfiles Protein kinase domain profile. 261 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g1011 605 Gene3D Phosphorylase Kinase; domain 1 238 336 - -
Lal10g1011 605 MobiDBLite consensus disorder prediction 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1011 Lal-Chr10 17294780 17299060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1011 68 587 Trihelix Transcription Factor Family AT1G70460 48.190 4.05e-151 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lal10g1011 PK_Tyr_Ser-Thr 3.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1011 - - lang:109342993 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0393 8 2643478 2647906 Lal10g1011 10 17294780 17299060 LSH
Lal25g0434 25 2950197 2955717 Lal10g1011 10 17294780 17299060 LSH