Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1003 ATGTCAAATCTGAGCAACGACCACAAGCACAAAGATTCATTTATCAACATTCCAACAATAAAGTATACTAAGCTTTTCATCAATGGAGAATTTGTGGATTCAGTTTCAGGAAAAACGTTTGAGACAGTGGATCCAAGAACAGAGGAAGTGATAACAGAAATAGCAGAGGGTACTAAAGAAGATGTAGATATTGCAGTGAAGGCTGCACGTGAGGCATTCGATTCGGGTCCATGGCCACGCATGACCGGTGCTGAGAGAGCAAAGATTATGATGAAATGGGCAGAACTAATTGATGAAAACATAGAAGAAATAGCAGCATTGGATACAATTGATGGTGGAAAATTATACAGTTGGTGTAAGGGTGTGGATATTCCTGAAGCAAGCAAAATCCTGCGTTACTATGCTGGTGCTGCTGACAAAATTCATGGACAAGTGTTCAAAACATCAAGGAACCTCCAGTTGTATACTCTTATGGAACCTGTTGGTGTTGTTGGACAGATTATCCCATGGAATTTCCCTACCATTATGTTCTTCATCAAGGCCACTCCTGCCTTGGCTGCTGGCTGCACCGTGGTCCTTAAGCCGTCTGAGCAAACGCCTCTTTCGGCTCTCTTTTATGCTCATCTTGCTAAACTGGCGGGTATCCCAGATGGAGTGCTCAATGTAGTACCGGGGTTAGGCTCGAATGCTGGAGCTGCAATAAGCTCACATATGGACATTGATGCGGTCAGTTTTACTGGTTCAACAGAAACAGGTCGCCAAGTAATGAAGGCTGCAGCAATGAGTAATTTGAAACCTGTCTCGCTCGAATTAGGAGGAAAGTCACCAGTCTTAGTTTTTGATGATGCCGATGTGGACGAAGCTGTTGACCTTGCTCTCTTTGGCATCCTACACAACAAGGGAGAAGTCTGTGTTGCATTTTCCAGAGTTTATGTCCAGGAAGGGATTTATGATAAGTTTGAGAAGAAGGTGCTGGAGAAGGCCAAAAATTGGGTAGTAGGAGACCCTTTTGATCCTAAAGTTCAACAAGGTCCTCAAACTAGTAAGGCACAATTTGATAAAATTCTTTCATATATTGAGCATGGAAAGAAAGAAGGAGCCACCCTCTTGACAGGGGGTAAGAAAATAGGCAACAAGGGATACTACATTGAACCTACTATTTTCACCAATGTTAAGGAGGACATGCTAGTATCACAAGATGAAATATTTGGACCTGTGATGGTACTTTCTAAGTTCAAGACTACTGAGGAAGCAATTAAGACAGCAAACAACACAAGATATGGTTTAGCAGCAGGGATTGTTACAAAGAACTTGGATATTGCAAACAGTGTCTCAAGGTCTATACGTGCAGGAATCATTTGGATCAATTGCTTTTTTGCCTTTGATATTGATTGCCCTTTTGGAGGGTTTAAGATGAGTGGATTTGGAAAAGATTATGGGTTAGAAGCACTTCACAAGTATCTTCAAGCTAAATCTGTTGCTACTCCTATTTACAATTCTCCTTGGCTTTGA 1512 0.4173 MSNLSNDHKHKDSFINIPTIKYTKLFINGEFVDSVSGKTFETVDPRTEEVITEIAEGTKEDVDIAVKAAREAFDSGPWPRMTGAERAKIMMKWAELIDENIEEIAALDTIDGGKLYSWCKGVDIPEASKILRYYAGAADKIHGQVFKTSRNLQLYTLMEPVGVVGQIIPWNFPTIMFFIKATPALAAGCTVVLKPSEQTPLSALFYAHLAKLAGIPDGVLNVVPGLGSNAGAAISSHMDIDAVSFTGSTETGRQVMKAAAMSNLKPVSLELGGKSPVLVFDDADVDEAVDLALFGILHNKGEVCVAFSRVYVQEGIYDKFEKKVLEKAKNWVVGDPFDPKVQQGPQTSKAQFDKILSYIEHGKKEGATLLTGGKKIGNKGYYIEPTIFTNVKEDMLVSQDEIFGPVMVLSKFKTTEEAIKTANNTRYGLAAGIVTKNLDIANSVSRSIRAGIIWINCFFAFDIDCPFGGFKMSGFGKDYGLEALHKYLQAKSVATPIYNSPWL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1003 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 273 462 IPR016163 GO:0016620
Lal10g1003 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 27 491 IPR016162 GO:0016491
Lal10g1003 503 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 8 503 - -
Lal10g1003 503 SUPERFAMILY ALDH-like 16 499 IPR016161 GO:0016491
Lal10g1003 503 Pfam Aldehyde dehydrogenase family 31 493 IPR015590 GO:0016491
Lal10g1003 503 PANTHER CYTOSOLIC ALDEHYDE DEHYDROGENASE 8 503 - -
Lal10g1003 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 297 308 IPR016160 GO:0016491
Lal10g1003 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 269 276 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1003 Lal-Chr10 17230807 17236981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1003 4 503 Aldehyde Dehydrogenase Gene Family AT3G24503 66.866 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1003 K12355 - gmx:100784449 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1038 16 6904433 6909191 Lal10g1003 10 17230807 17236981 PCT
Lal10g1003 10 17230807 17236981 Lal16g1038 16 6904433 6909191 PCT