Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1002 ATGACTGATCTCACCAATGGTCACCATCACCATGCTTCTTCCATCAACATACCTTCCATCAAATTCACCAAACTCTTCATCAATGGACAATTTGTTGATTCCCTTTCAGGGAAGGAGTTTGAGACAATTGATCCAAGAACAGAGGAAGTAATTGCAAAAATCTCAGAGGGAAGAAAGGAAGACATTGATGTTGCTGTGAAAGCAGCACGTCTTGCTTTTGATAATGGTCCATGGCCTCGTATGCCCGCCACTGAAAGAGCAAAAATCATGATGAAATGGGCAGATATAATTGAACAAAACATAGAAGAGTTAGCAGCATTAGATACAATTGATGCAGGAAAATTGTACAATTGGTGTAAAGTTGTTGACATTCCTGGAGTAGCCAGTACTATACGCTACTATGCTGGTGCTGCTGATAAAATTCATGGAGAGGTGTTAAAACCCTCTAGGGAGTTGCATGCATATACTTTGATGGAACCAATTGGTGTTGTTGGACACATTATTCCATGGAATTTCCCTAGCACTATGTTTGCTGCAAAGGTTGCTCCTGCTTTGGCCGCAGGTTGCACCATGATCCTCAAGCCTGCTGAACAAACACCTCTTTCAGCTTTGTTCTATGCTCATCTAGCTAAGCAGGCTGGAATTCCAGATGGAGTGCTCAATGTAGTTCCTGGATTTGGTCCAACTGCAGGTGCTGCAATAAGCTCACACATGGACATAGATAAGGTTAGCTTTACTGGTTCAACAGATGTAGGGCGTGAAGTAATGCAAGCTGCGGCTAGGAGTAATTTAAAACCAGTTTCACTTGAATTAGGAGGCAAGTCTCCCCTTGTAATTTTTGATGATGCTGATGTAGATAAAGCTGCTGAGCTTGCTCTCTTGGGCATTCTATTTAACAAGGGAGAAATTTGTGTAGCTAGTTCCCGTGTGTTTGTTCAGGAAGGTATCTATGATGAATTTGAGAAGAAATTGGTGGAAAAGGCAAAATCTTGGTTAGTTGGGGACCCTTTTGATCCTAAATCTCAGCAAGGACCTCAAGTGGACAAGAAGCAATTTGAAAAAATTCTTTCATATATTGAGCATGGGAAGAGAGAAGGAGCCACCCTTTTGACCGGGGGCAAGAGAGTGGGAAATAAAGGATACTACATTGAACCTACAATTTTCTCCAATGTTAAGGAGGACATGCTCATTGTACAAGATGAAATATTTGGCCCTGTCATGTCATTGAAGAAGTTTAAGACCATTGAGGAAGGAATAGAGAGTGCTAACAATACAAAATATGGGCTAGCAGCAGGAATTGTGACAAAGAATTTGGATATAGCAAACACTGTGTCAAGGTCCATTAGAGCAGGCATTGTGTGGATAAACTGTTATTTTGCCTTTGGGAATGACATTCCTTATGGAGGGTATAAGATGAGTGGATTTGGAAGAGATTTTGGATTGGAAGCCCTTCACATGTACCTACAAGTTAAATCTGTTGTAACTCCCATTTACAATTCTCCTTGGCTTTGA 1512 0.4114 MTDLTNGHHHHASSINIPSIKFTKLFINGQFVDSLSGKEFETIDPRTEEVIAKISEGRKEDIDVAVKAARLAFDNGPWPRMPATERAKIMMKWADIIEQNIEELAALDTIDAGKLYNWCKVVDIPGVASTIRYYAGAADKIHGEVLKPSRELHAYTLMEPIGVVGHIIPWNFPSTMFAAKVAPALAAGCTMILKPAEQTPLSALFYAHLAKQAGIPDGVLNVVPGFGPTAGAAISSHMDIDKVSFTGSTDVGREVMQAAARSNLKPVSLELGGKSPLVIFDDADVDKAAELALLGILFNKGEICVASSRVFVQEGIYDEFEKKLVEKAKSWLVGDPFDPKSQQGPQVDKKQFEKILSYIEHGKREGATLLTGGKRVGNKGYYIEPTIFSNVKEDMLIVQDEIFGPVMSLKKFKTIEEGIESANNTKYGLAAGIVTKNLDIANTVSRSIRAGIVWINCYFAFGNDIPYGGYKMSGFGRDFGLEALHMYLQVKSVVTPIYNSPWL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1002 503 SUPERFAMILY ALDH-like 14 499 IPR016161 GO:0016491
Lal10g1002 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 27 491 IPR016162 GO:0016491
Lal10g1002 503 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 4 503 - -
Lal10g1002 503 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 4 503 - -
Lal10g1002 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 273 462 IPR016163 GO:0016620
Lal10g1002 503 Pfam Aldehyde dehydrogenase family 32 493 IPR015590 GO:0016491
Lal10g1002 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 297 308 IPR016160 GO:0016491
Lal10g1002 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 269 276 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1002 Lal-Chr10 17217674 17223629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1002 4 503 Aldehyde Dehydrogenase Gene Family AT3G24503 72.655 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1002 K12355 - gmx:100783920 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0401 8 2706495 2710197 Lal10g1002 10 17217674 17223629 LSH