Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0979 ATGGTGGAAAATCTACCTCCTGGCTTCAGGTTCCATCCTAGAGATGAAGAACTCATCACATATTATCTTACAAGGAAAGTTTCTGATATTAGTTTCACATCCAAAGCTATAACAACTATTGATCTCAACAAGTCTGAACCTTGGGACCTCCCAGGTAAGGCTTCAATGGGGGAGAAGGAATGGTATTTTTTCAATATGAGAGACAAGAAATATCCAACTGGACTTAGAACCAATCGAGCTACTGAATCAGGTCACTGGAAAACTACAGGGAAAGATAAGGAGATTTTTTGTGCTAGGGTTTTGGTAGGAATGAAGAAAACCCTAGTATTTTATAAGGGTAGAGCTCCAAGAGGTGAGAAAAGCAATTGGGTCATGCACGAATATAGACTTGAAAACATGAATGGTTTTGGACATTCAAAGGATGAATGGGTGGTTTGTAGGGTTTTCCAAAAAACAGCAACAGCCAAAAAACCACAGCAGACATCACCATCCAAACCAGAGTCCCCATGTGACACTACCTCTATGGTCAATGAATTTGGTGATGTTGAACTGTCCAATAATCTAAACAATGTTACAAATTCATCAAGTGCATTCATCAATATTAATTCAGGACAAACTTACAACAATGATCTTAGCAATGCCAACACAAATATGAACTTGACCATGAATTTTCCATGTGAGGTTCCCTCTATTCCATCTCTCTCATGGCCTTCAGGGTTGCTGAATCCAAATAATATTTCTGTAAATTCCTTGCTTCTCAAGGCATTACAACATAGAAACTATCAACAACAAAGAGAAGCTGCAGCAGTCAGTTATCATTTTGCATCATATAATAATATGCCTCAACAGGGAATTTCCCAAGTTGGAACTCATCATCATGATGACCTAAGTTCATCAAATCTCAGTGCTTCTTCTTCTTCAAAAGTTTTAGAATGTATGCTACAGCAGGAGCAACCATTCAATTTGGACTCCATTTGGTGA 981 0.3833 MVENLPPGFRFHPRDEELITYYLTRKVSDISFTSKAITTIDLNKSEPWDLPGKASMGEKEWYFFNMRDKKYPTGLRTNRATESGHWKTTGKDKEIFCARVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENMNGFGHSKDEWVVCRVFQKTATAKKPQQTSPSKPESPCDTTSMVNEFGDVELSNNLNNVTNSSSAFININSGQTYNNDLSNANTNMNLTMNFPCEVPSIPSLSWPSGLLNPNNISVNSLLLKALQHRNYQQQREAAAVSYHFASYNNMPQQGISQVGTHHHDDLSSSNLSASSSSKVLECMLQQEQPFNLDSIW 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0979 326 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 292 - -
Lal10g0979 326 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Lal10g0979 326 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Lal10g0979 326 MobiDBLite consensus disorder prediction 154 175 - -
Lal10g0979 326 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Lal10g0979 326 MobiDBLite consensus disorder prediction 283 302 - -
Lal10g0979 326 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
Lal10g0979 326 PANTHER BNACNNG63190D PROTEIN 2 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0979 Lal-Chr10 17056957 17059651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0979 1 326 NAC Transcription Factor Family AT3G18400 54.599 5.12e-109 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal10g0979 NAM 7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0979 - - gmx:100780030 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0979 10 17056957 17059651 Lal10g0979 10 17056957 17059651 ECH
Lal8g0429 8 2880130 2882888 Lal10g0979 10 17056957 17059651 LSH