Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0974 ATGGCAACACCGTTAACTGCAGTGCTCTCAAATCCCGTCAACAAAGTGGATTCTTCTTCTTCTTCATCTTCCTCAAATGGATTCGGTTTGAACCGTTCCCAATTGGAATCGCCAATTTTGATATTTTGCTTTTTCCATAAAGCGATTCGGAATGAGCTTGATGCATTGAATCGATTAGCTATGGCATTCGCAAATGGTAACCGTTCTGATATTGACCCTCTTTCAGAGCGCTATCATTTTATCAGATCCATGTACACGCATCACTCCAATGCTGAAGACGAGGTGATTTTTCCAGCTCTAGATATACGTGTGAAGAATGTAGCACAGACATATTCTCTTGAACACAAAAATGAAAGCAATCTTTTTAATCATCTATTTGAGCTGTTAAATAGCTCAAATACTTCCATCCATAATGATGAAAATTTCCCAAGAGAGTTAGCATCCTGCACCGGAGCTCTGCAAACATCAGTTAGTCAACACATGGCTAAGGAAGAGGAGCAGGTTTTTCCACTGCTTATTGAGAAATTCTCTCTCGAGGAACAGGCATCTTTAGTTTGGCAATTTCTTTGCAGTATTCCTGTGAATATGATGGTAGAATTTCTTCCATGGCTTTCAACATCTATATCACCTGATGAATCTCATGACTTGCGGAAGTGCTTAAGCAAGGTAGTACCGGAGGAAAAGCTTCTTCAGAAGGTTATTTTCACCTGGATGGATGGAAGTAGTGCTAAAACAGTTGATAATTGTATAGATCATTCTCAGGTTCGAAGTTGTACTACTCCATTAACCCATCAAAATGGAAAAGTAAGATGTGCATGTGAGTCAACAGCAACTGATAAAAGGAAATGTTCTGGATCTATCCTGGATGTTTCTGATAGCATGGGAACGCATCCCATAGATGAAATATTGATTTGGCATAATGCAATAAAAAAGGAGTTGAATGAAATAGCAGCGGAGACCAGAAAGATACAACTCTCTGGAGATTTGACTAATCTGTCAGCTTTTAATGAAAGGTTGCAATTCATCGCCGGAGTTTGCATGTTTCACAGTATTGCTGAGGACAAGGTTATATTTCCAGCAGTAGATGAAGAAGTTTCTTTCTTTGAAGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCACTGTTTGATTGAAAGTATACAAAGTGAAGGAGCCACATCTAATTCGGAAGCGGAATTTTTTTCCAAATTGTGCTCACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATGATGAAGAAGTTCAGGTTCTTTCACTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGAGAACTTCTGTACCAAAGCTTGTGTGTGATGCCTCTGAAATTGATTGAGCGTGTCTTACCATGGTTGGTAGGGTCATTATCTGAATATGAAGCAAAGCTGTTTCTGAAGAACATGCAATTAGCAGCTCCTGCCATGGATTCTGCTCTAGTCACACTCTTCTGTGGTTGGGCTTGCAAGGGACGTAATGATGGTCTGTGTTTGTCTTTAAGAGCATCAGCTTGCTGTCGATTTTCTGATATCGAAGATAATATTGTTCGGTCTTCCTGTACTTGTGATTGTAAGTCTGCATTATCTGGTAGCGGTTACTCAGTATTAGCTGAATCAGATGAGACCCAAAGACCAGCCAAGCGAAACAAATTGGAGTTGCACAGGAATGTAGATGTACCTGAAACTTCAGAAAATGGAAGTACCCAGAAACAATGTAACGGTGCCCGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAGCACTAACAATTTGGGGCTGAGTTCTCTTTCAACAGCCAAGTCCCTCCGCTCCTTGTCTTTCACTTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTCATATGGGAAAGTGACAGCAGCCCCTGTGATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACAAAAGGACTTGGAGTATTTAGATGTTGAATCTGGAAAGCTAAGTGATGGTGATGAAACAGTTATTCGACAATTTAGTGGAAGATTTCGTCTTTTATGGGGTTTATATAGAGCCCATAGTAATGCTGAAGATGATATAGTATTTCCAGCATTGGAATCCAAAGAGTCGCTTCATAATGTCAGCCATTCATACACACTGGACCACAAGCAAGAAGAAAAGTTATTTGAAGATATTTCATGCGCTCTTTCTGAGCTCTCTGTCCTTCATGAAGCCTTGCAGATTACCCGTATGTCACAGGATTTGAGTGAAGGAAATTTTGGAACTTCTAATACTGATGATAACGATATTATCAGAAAGTACAATGAGCTTTCAACTAAGCTTCAAGGGATGTGCAAGTCCATAAGAGTGTCATTGGATCAGCATATTTTCAGGGAAGAGCTGGAGCTCTGGCCATTGTTTGGTAGACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTGACTTCTGCACTTACTCAGGATGAACAGAACAAAATGATGGATACGTGGAAACAGGCAACGAAGAACACTATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAGAGTCCAGTATCCATATCACAAGCAGAAACATCAGAGTGTAGCACCTCTCTAAGAGGTTCTGACTATCAAGAAAGCTTGGACCTGAATGATCAGATGTTCAAGCCGGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGGTCCGGAAAGTTTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCGTACCTTGTGCAGAATTTAATGACAAGTCGATGGATAGCTTCCCAGCAGAACTTACCTAAAGCTTTATCTGGGGAACCATCTAATAAAGAAATAGGACTGGTACCATCATTTCGGGACCCACAGAAACAAGTACTTGGATGTGAGCATTATCAGCGAAATTGCAAGCTTCGGGCTGCTTGTTGTGGCAAGTTATTTACATGCAGATTTTGCCATGATAATATGAGTGATCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCGCTGTCTGACTATACAGCCAGTTGGGCCTATATGCATCTCGTCTTCATGTAATGGACATTCCATGGCAAAATACTACTGCAACATATGCAAATTTTTCGATGATGAAAGGAATGTATATCACTGCCCATTCTGCAATATATGCCGTGTTGGACAAGGGCTTGGGATTGATTATTTTCATTGTATGAAATGTAACTGTTGCCTGGGGATTAAATCAACATCTCACAAGTGTCTGGAAAAAGGTTTAGAAATGAACTGCCCAATATGCTGTGATGATTTGTTCACATCAAGTGCAACAGTCAGAGCTCTACCTTGTGGACATTATATGCATTCATCTTGTTTTCAGGCATATACTTCTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTATTTTGGTATGCTTGATGCATTATTAGCTGCTGAGGAGCTTCCTGATGAGTACAAGGACCGCTCTCAGGACATACTCTGCCATGATTGTGATCGAAAGGGCACTTCACGGTTCCACTGGTTATATCACAAATGTGGATTTTGTGGCTCCTACAATACCCGGGTGATCAAGACTGAGGCCTCAAACTCCAGCTGCTGA 3705 0.4081 MATPLTAVLSNPVNKVDSSSSSSSSNGFGLNRSQLESPILIFCFFHKAIRNELDALNRLAMAFANGNRSDIDPLSERYHFIRSMYTHHSNAEDEVIFPALDIRVKNVAQTYSLEHKNESNLFNHLFELLNSSNTSIHNDENFPRELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMVEFLPWLSTSISPDESHDLRKCLSKVVPEEKLLQKVIFTWMDGSSAKTVDNCIDHSQVRSCTTPLTHQNGKVRCACESTATDKRKCSGSILDVSDSMGTHPIDEILIWHNAIKKELNEIAAETRKIQLSGDLTNLSAFNERLQFIAGVCMFHSIAEDKVIFPAVDEEVSFFEEHAEEESQFNDFHCLIESIQSEGATSNSEAEFFSKLCSHADHIMETIQRHFHDEEVQVLSLARKHFSFKRQRELLYQSLCVMPLKLIERVLPWLVGSLSEYEAKLFLKNMQLAAPAMDSALVTLFCGWACKGRNDGLCLSLRASACCRFSDIEDNIVRSSCTCDCKSALSGSGYSVLAESDETQRPAKRNKLELHRNVDVPETSENGSTQKQCNGARSCCVPGLGVSTNNLGLSSLSTAKSLRSLSFTSSAPSLNSSLFIWESDSSPCDVGSAERPIDTIFKFHKAIQKDLEYLDVESGKLSDGDETVIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKESLHNVSHSYTLDHKQEEKLFEDISCALSELSVLHEALQITRMSQDLSEGNFGTSNTDDNDIIRKYNELSTKLQGMCKSIRVSLDQHIFREELELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECLKESPVSISQAETSECSTSLRGSDYQESLDLNDQMFKPGWKDIFRMNQNELESEVRKVYRDSTLDPRRKAYLVQNLMTSRWIASQQNLPKALSGEPSNKEIGLVPSFRDPQKQVLGCEHYQRNCKLRAACCGKLFTCRFCHDNMSDHSMDRKATLEMMCMRCLTIQPVGPICISSSCNGHSMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCLGIKSTSHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTSSHYTCPICSKSLGDMAVYFGMLDALLAAEELPDEYKDRSQDILCHDCDRKGTSRFHWLYHKCGFCGSYNTRVIKTEASNSSC 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0974 1234 CDD Hr-like 45 170 - -
Lal10g0974 1234 Gene3D nmb1532 protein domain like 36 190 - -
Lal10g0974 1234 Gene3D nmb1532 protein domain like 300 447 - -
Lal10g0974 1234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1114 1163 IPR013083 -
Lal10g0974 1234 ProSiteProfiles Zinc finger RING-type profile. 1119 1161 IPR001841 -
Lal10g0974 1234 Gene3D - 1190 1231 - -
Lal10g0974 1234 CDD Hr-like 300 428 - -
Lal10g0974 1234 SUPERFAMILY CHY zinc finger-like 982 1047 IPR037274 GO:0008270
Lal10g0974 1234 Pfam Zinc-ribbon 1166 1223 IPR039512 -
Lal10g0974 1234 ProSiteProfiles Zinc finger CHY-type profile. 983 1052 IPR008913 GO:0008270
Lal10g0974 1234 PANTHER CHY ZINC FINGER PROTEIN 23 1234 - -
Lal10g0974 1234 SMART ring_2 1119 1160 IPR001841 -
Lal10g0974 1234 CDD Hr-like 647 807 - -
Lal10g0974 1234 CDD RING-H2_Pirh2 1118 1161 - -
Lal10g0974 1234 Pfam Ring finger domain 1118 1160 IPR001841 -
Lal10g0974 1234 Pfam CHY zinc finger 990 1065 IPR008913 GO:0008270
Lal10g0974 1234 SUPERFAMILY Zinc hairpin stack 1056 1112 IPR037275 -
Lal10g0974 1234 SUPERFAMILY RING/U-box 1116 1171 - -
Lal10g0974 1234 ProSiteProfiles Zinc finger CTCHY-type profile. 1055 1118 IPR017921 -
Lal10g0974 1234 Pfam Hemerythrin HHE cation binding domain 297 430 IPR012312 -
Lal10g0974 1234 Pfam Hemerythrin HHE cation binding domain 46 172 IPR012312 -
Lal10g0974 1234 Pfam Hemerythrin HHE cation binding domain 645 808 IPR012312 -
Lal10g0974 1234 Gene3D nmb1532 protein domain like 641 884 - -
Lal10g0974 1234 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 23 1234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0974 Lal-Chr10 17019905 17029145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0974 25 1234 C2H2 Transcription Factor Family AT3G18290 66.530 0.0 1641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0974 K16276 - gmx:100791354 2109.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0974 10 17019905 17029145 Lal10g0974 10 17019905 17029145 ECH
Lal16g1004 16 6675049 6686687 Lal10g0974 10 17019905 17029145 PCT
Lal10g0974 10 17019905 17029145 Lal16g1004 16 6675049 6686687 PCT