Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0961 ATGGGGGAACTCGATCTATCGAAGAAAGTAGCTGATAGGTATCTGAAGCGTGAGGTCCTTGGTGAAGGTACCTATGGAGTCGTTTACAAAGCCATTGATACTGAGACAGGACAGACGGTTGCGATTAAGAAAATTCGGCTTGGCAAGCAGAAAGAAGGGGTGAATTTTACAGCTCTTAGAGAAATTAAACTCCTTAAAGAGCTTAAATATTCACATATAATTGAGTTGATTGATGCCTTCCCACATAAAGGGAATTTGCATCTCGTGTTTGAATTCATGGAGACAGATCTTGAAGCTGTCATACGAGACCGGAATATTTTTCTTTCACCAGGAGATATAAAATCTTTCCTTCAAATGACTCTAAAAGGTCTTGCGTTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATATTTGGAAGCCCAGACCGCAGGTTCACTCATCAGGTATTTGCTCGATGGTACAGAGCACCTGAGCTATTATTTGGTACCAAGCAGTATGGTTCAGGGGTTGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTGCTTCTTCGTCGACCCTTTCTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTTGCAGCACTAGGAACTCCATCACCTTCTCAATGGCCTGATATGGTATACCTTCCTGATTATGTTGAATACCAATACGTTCCCACCCCTCCTTTGCGCTCCTTATTTCCAATAGCAAGTGATGATGCTTTAGATTTGTTGTCGAAGATGTTTACATATGATCCAAAAGTTAGAATTTCAGCTCAGCAGGCATTAGAGCACAGGTACTTTACATCTGCACCTCTGCCCACAGATCCAGATAAGCTTCCGAGACCTGCCCCTAAGAGAGAACCCAAGGCTTCAGATTTTGATTCACATGAGGGTCCTACTGTCCTATCGCCTCCGAGAAAGTCTAGGAGAGTGATACCAGGGCGTGATGGGTTTGAAGGAAATTCTTTGCAAAGAGATAAGGTTGATGACAATGTTGGTAATTCCAGACAGACAGCTGGTGATACTGCAGGCAAGAATGATCCAGCACCAATGTCACTGGATTTTTCTGTCTTTGGATTAAAAGCTCCAAATAGACCTACAATTAACAGGTAA 1194 0.4221 MGELDLSKKVADRYLKREVLGEGTYGVVYKAIDTETGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKYSHIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSFLQMTLKGLAFCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAALGTPSPSQWPDMVYLPDYVEYQYVPTPPLRSLFPIASDDALDLLSKMFTYDPKVRISAQQALEHRYFTSAPLPTDPDKLPRPAPKREPKASDFDSHEGPTVLSPPRKSRRVIPGRDGFEGNSLQRDKVDDNVGNSRQTAGDTAGKNDPAPMSLDFSVFGLKAPNRPTINR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0961 397 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Lal10g0961 397 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
Lal10g0961 397 MobiDBLite consensus disorder prediction 306 321 - -
Lal10g0961 397 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Lal10g0961 397 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Lal10g0961 397 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g0961 397 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g0961 397 MobiDBLite consensus disorder prediction 295 397 - -
Lal10g0961 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lal10g0961 397 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Lal10g0961 397 MobiDBLite consensus disorder prediction 336 359 - -
Lal10g0961 397 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g0961 397 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Lal10g0961 397 SUPERFAMILY Protein kinase-like (PK-like) 9 302 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0961 Lal-Chr10 16922295 16925288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0961 8 396 Core Cell Cycle Gene Families AT1G18040 74.036 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Lal10g0961 Pkinase 3.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0961 K02202 - jre:109020969 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0961 10 16922295 16925288 Lal10g0961 10 16922295 16925288 ECH
Lal8g0459 8 3053725 3057864 Lal10g0961 10 16922295 16925288 LSH
Lal25g0470 25 3244175 3250403 Lal10g0961 10 16922295 16925288 LSH
Lal15g0929 15 7129172 7134846 Lal10g0961 10 16922295 16925288 PCT
Lal10g0961 10 16922295 16925288 Lal15g0929 15 7129172 7134846 PCT