Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0956 ATGTGGATGATGGGTTATGATGAAGATGGAGAGTTCAACATGGTTGATCCTTCACTCCATGAAAGGAAACTCATGACTCTCATGCCAAGGCCAATGACTACTTATCCTAACAACACTTCAACAACAGCAACAATCACTCCTTGCTTAAATCTTATTAATGGCAATGACTTATTTTCACAATATCACCATCTTGATTATGAATATGAACTTATAGCAACAATGGCAGATCATAGCTGGAGAGATCAGTTCAATTTTGTTCCACCAGTTGTGGTGAGTTCTAGGTGGAATCCAACTCCAGAACAGCTAAGAGAACTTGAAGAATTGTATAGAAGAGGGACAAGAACACCATCTGCAGAACAAATTCAACACATCACTGCACAGCTTAGAAGGTTTGGTAAGATTGAAGGGAAGAATGTTTTCTATTGGTTTCAAAATCACAAAGCCAGAGAAAGGCAGAAGCGCCGCCGTCAAATGGAAACTGCTGCTGCTGATCATGGTGATCACCACCACCACGATTCTGATACTCCACAGAAAAAGGAATTAACTGGAAGTAGAACAGTGTTTGAAGTTGAAGAAACCAAGAACTGGGTACCCTCTACACATTGCAGTAGTACTCTTGGAGAGGAATCTGTCTCCATACAAATGGCAGAAAAAGCAGAAATTGCAGTGTGTAAAACATATGGATGGCTCCAATTCAATGAGAGGGAATTACAACAAAGAAGAAACTTTATGGAAAGGAATGACACATGGCATGTGATGCAGTTTTCTTGTCCTTCTTCTGCACCTGCCACCAACCTCATAAACACCCCTCCTTATTGTAATAATAATCATGCATCAACCACAACAGTGACAACAAGAACAATGGACCCTATAAAGCTCATTAAGACAACACATCATGATCTTAACTTGTTTATTTCACCTCAGAGAGATAATGGTGTTATCCATTTAAGCAGTTGTAGCAACAACAGTATTGAATATGATGATCATAACTGTGTGGAATCTAATCAAACACTTCAACTTTTCCCTCTAAGGAATGGTGATGGGAGCAGCCATAACATTAATGATAAAGAGATCAATGAGATATCAGCCTCAACAATGAATGCTAACTTGACCCCTAGCCAGTTTTTTGAGTTCCTTCCATTGAAAAATTAA 1152 0.3906 MWMMGYDEDGEFNMVDPSLHERKLMTLMPRPMTTYPNNTSTTATITPCLNLINGNDLFSQYHHLDYEYELIATMADHSWRDQFNFVPPVVVSSRWNPTPEQLRELEELYRRGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMETAAADHGDHHHHDSDTPQKKELTGSRTVFEVEETKNWVPSTHCSSTLGEESVSIQMAEKAEIAVCKTYGWLQFNERELQQRRNFMERNDTWHVMQFSCPSSAPATNLINTPPYCNNNHASTTTVTTRTMDPIKLIKTTHHDLNLFISPQRDNGVIHLSSCSNNSIEYDDHNCVESNQTLQLFPLRNGDGSSHNINDKEINEISASTMNANLTPSQFFEFLPLKN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0956 383 MobiDBLite consensus disorder prediction 154 181 - -
Lal10g0956 383 SMART HOX_1 90 157 IPR001356 GO:0003677
Lal10g0956 383 MobiDBLite consensus disorder prediction 150 181 - -
Lal10g0956 383 Pfam Homeodomain 93 152 IPR001356 GO:0003677
Lal10g0956 383 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 288 383 IPR044555 GO:0003700|GO:0099402
Lal10g0956 383 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 71 269 IPR044555 GO:0003700|GO:0099402
Lal10g0956 383 SUPERFAMILY Homeodomain-like 93 160 IPR009057 -
Lal10g0956 383 ProSiteProfiles 'Homeobox' domain profile. 98 153 IPR001356 GO:0003677
Lal10g0956 383 Gene3D - 91 153 - -
Lal10g0956 383 CDD homeodomain 94 154 IPR001356 GO:0003677
Lal10g0956 383 PANTHER WUSCHEL, PUTATIVE-RELATED 71 269 - -
Lal10g0956 383 PANTHER WUSCHEL, PUTATIVE-RELATED 288 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0956 Lal-Chr10 16881573 16884266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0956 1 383 Wox Gene Family AT3G18010 38.060 1.19e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lal10g0956 Homeodomain 9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0956 - - lang:109357876 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0956 10 16881573 16884266 Lal10g0956 10 16881573 16884266 ECH