Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0948 ATGCAGTGGTCATTCTCAAACAAGGGTTCAGGCCTTCCTCAGTTCCTATCATTTAAGGGCACTCAGGAAGATAGGCAAAGAAAAACTGTTCTTGATTCAAAAGCTTCAACTGGTTATATGACCACATCATTAACTAAGGATGCTTCTGAGTCTATCCAGAAACCATTTTCTGGTGTAGTCCAGAGAAATTTGTCCAGAAACCAACATGAAATCATAGTCTATCCAGAACAATGTTTTGATGCACATTCACCTTGCCATCAAGAATCAAGAATATTTCCAGTTTCCAACCAATCAAATCAAGTGAGTCATGTTCTTCAATCTAGTGTTGCTATGACCGGATCGAATATGATCAATTCATCCATAAAACCACAACCTCTTGGTTCCAAATCCTCTGCCACACCGGTTTTTATCCTTCCATCAATAGGTTCTATTGTTGGCTCAACTGACTTAAGGAATTGTTCCAAATCCTCTGTCACACCTACTCAGCTTACCATTTTCTATGGTGGTTCTGTATGTGTTTATGATGACATATCTCCTGAGAAGGCTCAGTCTATAATGTTACTGGCTGGAAATGGTATAAAACCAATTCAGAATAGGACAGTTTCCACACCTAAATTGCAGCCAGAAATCTCTAATCCCTCCAATGATGATTGCATCATTGTAGGCCAGTCCTATACCTCACCCTTGCCAAGCCCTCTCCCGATGACCTCTCGTGCCGGTTCTCGGCCTGGTGGTGGATCTTCTAGCAACAATGAACTCACAATACTAAGACCAGTAGGACCTTCAGCTACCCTTAGCAACCATTTACAATCTCCTAAGGTTGTTGGCTCTGGAGGATTTGCAGCTACAAAAATGGTTCAACAAGTTGGTGGCTTGCCTCAGGCGCGCAAAGCATCTTTGGCTCGATTTTTGGAGAAGCGAAAGGAAAGGGTAGTTACAACATCACCATACTATATGAGCAAGAAATCATCAGAATGCAGCACTCCAGGATCAAGTGGTTTTAGTTTTTCTATCACTTCCTCTGATTCATGTACTCTACCAGCCATTAACTAG 1053 0.4188 MQWSFSNKGSGLPQFLSFKGTQEDRQRKTVLDSKASTGYMTTSLTKDASESIQKPFSGVVQRNLSRNQHEIIVYPEQCFDAHSPCHQESRIFPVSNQSNQVSHVLQSSVAMTGSNMINSSIKPQPLGSKSSATPVFILPSIGSIVGSTDLRNCSKSSVTPTQLTIFYGGSVCVYDDISPEKAQSIMLLAGNGIKPIQNRTVSTPKLQPEISNPSNDDCIIVGQSYTSPLPSPLPMTSRAGSRPGGGSSSNNELTILRPVGPSATLSNHLQSPKVVGSGGFAATKMVQQVGGLPQARKASLARFLEKRKERVVTTSPYYMSKKSSECSTPGSSGFSFSITSSDSCTLPAIN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0948 350 Pfam tify domain 159 190 IPR010399 -
Lal10g0948 350 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 1 223 - -
Lal10g0948 350 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 223 350 - -
Lal10g0948 350 Pfam Jas motif 293 318 IPR018467 -
Lal10g0948 350 SMART tify_2 156 191 IPR010399 -
Lal10g0948 350 MobiDBLite consensus disorder prediction 320 350 - -
Lal10g0948 350 MobiDBLite consensus disorder prediction 226 255 - -
Lal10g0948 350 ProSiteProfiles Tify domain profile. 156 191 IPR010399 -
Lal10g0948 350 MobiDBLite consensus disorder prediction 241 255 - -
Lal10g0948 350 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 223 350 IPR040390 -
Lal10g0948 350 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 223 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0948 Lal-Chr10 16808424 16811256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0948 1 326 Tify Gene Family AT3G17860 38.439 9.78e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lal10g0948 tify 4.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0948 K13464 - gmx:100807288 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0948 10 16808424 16811256 Lal10g0948 10 16808424 16811256 ECH
Lal8g0474 8 3177479 3183470 Lal10g0948 10 16808424 16811256 LSH