Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0945 ATGGAACAATATTCATCAAATTCAGAACCACCACCAAAGTCTCTGATGGAAAACCTTCTTGGCCTTCTAAGGGTTCGTGTTAAGCGTGGTGTTAACCTTGCTGTTCGTGATGTTCGTAGCAGCGATCCTTATGTTATTCTTAAGATGGGTAAACAGAAATTTAAGACTCGTATGATTAAAAAGGATGTGAATCCTGAGTGGAATGAAGATATTACCTTCTCTGTTTTAGATCCGAATCTTCCAATTTTACTGACTGTGTATGATCATGATACTTTTAGCAAAGACGATAAAATGGGCGATGCTGAATTCGAAATGTTATCATTTATAGAAGCCTTAAGGATGAATGTAAATGGCCTCCCAAATGGTACTATAATATCAAGAATACAACCAAGCAAGCAAAATTGCCTAGTAGATGAAAGCTGCATCACTTACACTAGTGGCAAGGTTATCCAAGATATGATCCTTAGATTGCAAAATGTGGAATGTGGTGAAGTAGAAATCCAATTGCATTGGATTCATCTTCCTGGTTGTAAGGGTTTATGA 543 0.372 MEQYSSNSEPPPKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYVILKMGKQKFKTRMIKKDVNPEWNEDITFSVLDPNLPILLTVYDHDTFSKDDKMGDAEFEMLSFIEALRMNVNGLPNGTIISRIQPSKQNCLVDESCITYTSGKVIQDMILRLQNVECGEVEIQLHWIHLPGCKGL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0945 180 Pfam C2 domain 21 107 IPR000008 -
Lal10g0945 180 PRINTS C2 domain signature 37 49 IPR000008 -
Lal10g0945 180 PRINTS C2 domain signature 61 74 IPR000008 -
Lal10g0945 180 PRINTS C2 domain signature 82 90 IPR000008 -
Lal10g0945 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 17 115 IPR035892 -
Lal10g0945 180 SMART C2_3c 22 117 IPR000008 -
Lal10g0945 180 ProSiteProfiles C2 domain profile. 7 121 IPR000008 -
Lal10g0945 180 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 11 179 - -
Lal10g0945 180 CDD C2_ArfGAP 20 163 - -
Lal10g0945 180 Gene3D C2 domain 17 176 IPR035892 -
Lal10g0945 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 11 179 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0945 Lal-Chr10 16792295 16794364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0945 53 180 C2H2 Transcription Factor Family AT1G70790 56.923 9.07e-50 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0945 - - lang:109340065 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0937 16 6220596 6230246 Lal10g0945 10 16792295 16794364 PCT
Lal23g0697 23 9659610 9660502 Lal10g0945 10 16792295 16794364 PCT
Lal10g0945 10 16792295 16794364 Lal16g0937 16 6220596 6230246 PCT
Lal10g0945 10 16792295 16794364 Lal23g0697 23 9659610 9660502 PCT