Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0942 ATGGTGTTAGGGTGGAGAAGGAAGAACAATAACAACAACCATAAGGGTGTTAAGCCAAATGTTGAGGTGGTGATTCCTAACCATTTTATGTGTCCAATTTCATTGGATTTGATGAAAGATCCTGTGACATTGTCTACTGGGATAACATATGATAGAGAAAACATGGAAAAGTGGTTTGATAATGGGAATTGCACATGTCCTGTTACAAACCAGATTGTGAGGAACTTTGATATGATTCCAAACCATTCTCTTAGGATAATGATCCAAGATTGGTGTGTGGAGAATAAGCAACATGGGGTAGAGAGGATTCCAACACCAAGAATACCGATTACTCGATTCGAGGTTTCCGAGCTTTTTCGCCAAGTGAAGGCTACAGCTAGAGGTTTAGACCAATATGGTTGCATTGAATTGGTGATGAAAATGAAGAGGCTGGGTAATGAGATGGATAGGAACAAGAGGTGCATAGTGGAGAATGGAGTACAAGATGCATTGGCTATAGCATTTGATGCATTTTCAAATGATTCTATTGAGAGGAATGTGAGTGTTCTTGAAGAGATTTTATCAGCACTGAATTGGTCATTTCCACTTCAATTGGAGGCACATAAATCTTTAGGGTCTAAGGCTTCCTTAACTTGCATGGTTTGGTTCTTGAAGCATCAAGATCTATCAGGGAAAGAGAAATCTATTGTTGCATTGGAAGAGCTTCTTTCCTTTGGTGATGAAAAGCATGTAGAGGCTTTATCAGAAATTGAAGGAGTTTATGAGTTATTGGTAGAGTTCATAAACAAGAGAATTAGTCCAACTATTACAAAGGCTTCAATGAGTGTAATTTGGTACTTGATTTCATCCTCTTATCCTTATAGTGAAAAAATGAAGTTAGCATTTATTGATTTGGGTTTGGTTTATTTTCTTTTCGACATTCTCATTGACTCGGAAAAGAGCCTTTGTGAAAAAGCCTTAGCCATTTTGGACTCCCTATGTAGCTGTGAACAAGGGAGGGAAAAAGCTTATAGTAATGATCTAACAGTTCCTTTATTGGTTAAGAAAATATTAAGAGTTTCAGCATTGACCACAGAACATTCTGTTTCTTCTATATGGAAGATGTGCAAGTTTGGTGAAAAAGATGATGAAAGAAGAGTTCTTGTTGAAGCACTTCAAGTTGGAGCATTTCAGAAGCTATTGTTGGTATTGCAGGTTGGATGTGATGATAAGATCAAAGAAAAAACCACTGAGCTTCTCAAAATGATGAATCCTTATAGGTCTCACTTGGAATGCATAGACTCAGATTACAAGAATCTCAAGAGATCATTTTAA 1314 0.3714 MVLGWRRKNNNNNHKGVKPNVEVVIPNHFMCPISLDLMKDPVTLSTGITYDRENMEKWFDNGNCTCPVTNQIVRNFDMIPNHSLRIMIQDWCVENKQHGVERIPTPRIPITRFEVSELFRQVKATARGLDQYGCIELVMKMKRLGNEMDRNKRCIVENGVQDALAIAFDAFSNDSIERNVSVLEEILSALNWSFPLQLEAHKSLGSKASLTCMVWFLKHQDLSGKEKSIVALEELLSFGDEKHVEALSEIEGVYELLVEFINKRISPTITKASMSVIWYLISSSYPYSEKMKLAFIDLGLVYFLFDILIDSEKSLCEKALAILDSLCSCEQGREKAYSNDLTVPLLVKKILRVSALTTEHSVSSIWKMCKFGEKDDERRVLVEALQVGAFQKLLLVLQVGCDDKIKEKTTELLKMMNPYRSHLECIDSDYKNLKRSF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0942 437 PANTHER WDSAM1 PROTEIN 13 437 IPR045185 GO:0061630
Lal10g0942 437 CDD RING-Ubox_PUB 29 71 IPR045210 -
Lal10g0942 437 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 437 - -
Lal10g0942 437 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Lal10g0942 437 SUPERFAMILY ARM repeat 149 421 IPR016024 -
Lal10g0942 437 SUPERFAMILY RING/U-box 23 101 - -
Lal10g0942 437 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Lal10g0942 437 Pfam U-box domain 25 96 IPR003613 GO:0004842|GO:0016567
Lal10g0942 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 103 IPR013083 -
Lal10g0942 437 Gene3D - 115 415 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0942 Lal-Chr10 16782537 16783850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0942 5 437 U-box Gene Family AT5G37490 43.115 1.96e-113 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0942 - - lang:109340061 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0482 8 3249242 3250552 Lal10g0942 10 16782537 16783850 LSH
Lal25g0488 25 3407803 3409104 Lal10g0942 10 16782537 16783850 LSH
Lal23g0709 23 9742527 9743840 Lal10g0942 10 16782537 16783850 PCT
Lal10g0942 10 16782537 16783850 Lal23g0709 23 9742527 9743840 PCT