Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0928 ATGGAGTACGGTGTTGGAGGCGGTGGTGGGTTCCCTGGGGATCACCTCCACCATCACAATCATCACCATGATGGTGGTTCATCGGATTCTCAGAAGAGAAAGAAGCGTTACCACCGTCACACTGCTAACCAGATCCAAAGGCTGGAATCCATGTTCAAGGAGTGTCCGCACCCTGATGAGAAACAAAGGATGCATTTGAGCAGGGAGTTAGGCTTGGCCCCTAGACAAATCAAATTTTGGTTCCAGAACAGAAGGACTCAGATGAAAGCCCAGCATGAACGAGCTGATAACTGCACACTGAAGGCAGAGAATGATAGGATACGCTGTGAGAACATTGCTTATAGGGAAGCCTTAAAAAACATTTTCTGCCCTTCTTGTGGTGGCCCTCCACTCCATGAAGATCCTTATGTTGATGAACAAAAGTTGAGATTGGAGAATGCACAACTCAAAGAGGAGGTTGATAGAGTATCTAGCATTGCAGCTAAATACATTGGTAGACCAATTTCTCAGCTTCCACAACTTCACCCTATTCACATATCCTCTTTGGACTTATCAATGGGGTGTTTTGGGACACAAGGTTTCAGAGGTGGTCCTTCTCTTGATCTTGATCTTCTACCAGGGAATGGTTCTTCATCATCCATGCAAAATGTGCCTTATCAACCTCCTTGTCTCTCAGACATGGATAAGTCCCTTATGTCAGATATTGCTTCAAATGCTATGGAAGAGTTAATTAGGCTTTTGCAGACTAATGAACCCTTGTGGATGAAGTCAAGCACTGATGGAAGAGATGTTCTTAATTTTGACACCTATGAAAGAATGTTCCCTAAGCCAAATAGTCACTTGAAGAACCCTAATGTTAGGATTGAAGCTTCTAGAGATTCAGGAGTTGTAATTATGAATGGCTTAACTATGGTTGACATGTTCATGGATCCAAACAAGTGGATGGAGCTATTTCCCACTATTGTCACAATGGCTAGAACATTTGAAGTTGTATCTTCTGGCATAATGGGTGGTCATAGTGATACTTTGCAATTGATGTATGAAGAGTTGCAAGTGCTTTCTCCACTTGTTTCAACTAGACAGTTCTACTTCCTGCGATACTGTCAGCAAATTGAGCAAGGGTTGTGGGCAATAGTTGATGTTTCTTATGATTTTTCCCAAGATAACAATCTTGTTCCTCAATTTCGATCTCATCGCCTTCCTTCCGGATGCTTTATACAGGACATGCCTAATGGATATTCCCAGGTCACTTGGGTTGAGCATGTAGAGATTGAAGATAAAACTCCGGTTCATCGGCTTTATAGGAATCTTATCTATAGTGGATTGGCATTTGGAGCACATAGATGGCTTAGTACTCTTCAGAGAATGTGTGAAAGAATTGCTTGTCTAATGGTATCAGGCAATTCTACCAGGGATCTTGGATCAGTGATTCCATCACCTGAGGGAAAGAGGAGCATGATGAAACTTGCACAAAGGATGATCACCAATTTCTGTGCAAGTATTAGCACATCATCCAGCCACAAATGGACCACTCTCTCAGGGTTGAATGAGATTGGAGTCAGAGTCACTGTCCATAATAGCTCAGACCCTGGCCAACCAAATGGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTCCCTATCCCTCCACAAACTGTATTCAATTTCTTCAAGGATGAAAGAAAAAGACCACAGTGGGATGTTCTTTCCAATGGTAATGCTGTCCAAGAAGTTGCTCATATAGCAAATGGTTCTCATCCTGGTAACTGCATATCTGTGCTTAGAGCTTTCAACACTAGTCAGAACAGCATGTTGATACTCCAAGAGAGCTGCATAGATTCTTCAGGCTCTCTTGTAGTTTACTGTCCAGTTGAATTGCCAGCAATAAACATCGCGATGAGCGGCGAAGACCCTTCATACATTCCCTTACTACCATCAGGATTCACCATTTCACCTGATGGCCAAAGTGATGAAGGAGGAGATGGAGCATCAACAAGCTCAAACACAAACAAAAACACTTCAAGTGGGTCACTAGTCACAGTTGCATTTCAGATTCTAGTGAGTAGTTTACCATCTGCAAAGCTGAATAAGGAGTCAGTGAATACTGTTAATAGCCTCATTGGAACCACTGTGCAACAAATAAAGGCTGCTTTGAATTGCCCTACTTCCTAA 2172 0.4277 MEYGVGGGGGFPGDHLHHHNHHHDGGSSDSQKRKKRYHRHTANQIQRLESMFKECPHPDEKQRMHLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCTLKAENDRIRCENIAYREALKNIFCPSCGGPPLHEDPYVDEQKLRLENAQLKEEVDRVSSIAAKYIGRPISQLPQLHPIHISSLDLSMGCFGTQGFRGGPSLDLDLLPGNGSSSSMQNVPYQPPCLSDMDKSLMSDIASNAMEELIRLLQTNEPLWMKSSTDGRDVLNFDTYERMFPKPNSHLKNPNVRIEASRDSGVVIMNGLTMVDMFMDPNKWMELFPTIVTMARTFEVVSSGIMGGHSDTLQLMYEELQVLSPLVSTRQFYFLRYCQQIEQGLWAIVDVSYDFSQDNNLVPQFRSHRLPSGCFIQDMPNGYSQVTWVEHVEIEDKTPVHRLYRNLIYSGLAFGAHRWLSTLQRMCERIACLMVSGNSTRDLGSVIPSPEGKRSMMKLAQRMITNFCASISTSSSHKWTTLSGLNEIGVRVTVHNSSDPGQPNGVVLSAATTIWLPIPPQTVFNFFKDERKRPQWDVLSNGNAVQEVAHIANGSHPGNCISVLRAFNTSQNSMLILQESCIDSSGSLVVYCPVELPAINIAMSGEDPSYIPLLPSGFTISPDGQSDEGGDGASTSSNTNKNTSSGSLVTVAFQILVSSLPSAKLNKESVNTVNSLIGTTVQQIKAALNCPTS 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0928 723 Gene3D - 18 106 - -
Lal10g0928 723 MobiDBLite consensus disorder prediction 14 31 - -
Lal10g0928 723 SMART HOX_1 32 95 IPR001356 GO:0003677
Lal10g0928 723 SUPERFAMILY Bet v1-like 480 715 - -
Lal10g0928 723 SUPERFAMILY Bet v1-like 226 460 - -
Lal10g0928 723 CDD homeodomain 33 92 IPR001356 GO:0003677
Lal10g0928 723 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
Lal10g0928 723 Coils Coil 139 159 - -
Lal10g0928 723 Pfam Homeodomain 34 89 IPR001356 GO:0003677
Lal10g0928 723 MobiDBLite consensus disorder prediction 651 673 - -
Lal10g0928 723 CDD START_ArGLABRA2_like 229 458 - -
Lal10g0928 723 MobiDBLite consensus disorder prediction 1 41 - -
Lal10g0928 723 ProSiteProfiles START domain profile. 225 462 IPR002913 GO:0008289
Lal10g0928 723 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 21 721 - -
Lal10g0928 723 SUPERFAMILY Homeodomain-like 17 91 IPR009057 -
Lal10g0928 723 SMART START_1 234 459 IPR002913 GO:0008289
Lal10g0928 723 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Lal10g0928 723 Gene3D - 232 459 IPR023393 -
Lal10g0928 723 Pfam START domain 235 459 IPR002913 GO:0008289
Lal10g0928 723 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 721 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0928 Lal-Chr10 16672584 16676709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0928 29 723 Homeobox Transcription Factor Family AT1G73360 65.527 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal10g0928 START 7.5e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0928 K09338 - gmx:100785023 1227.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0928 10 16672584 16676709 Lal10g0928 10 16672584 16676709 ECH
Lal8g0493 8 3370101 3373345 Lal10g0928 10 16672584 16676709 LSH
Lal25g0506 25 3574847 3578252 Lal10g0928 10 16672584 16676709 LSH
Lal16g0913 16 6015043 6018917 Lal10g0928 10 16672584 16676709 PCT
Lal15g0896 15 6745523 6749358 Lal10g0928 10 16672584 16676709 PCT
Lal23g0716 23 9803184 9807772 Lal10g0928 10 16672584 16676709 PCT
Lal10g0928 10 16672584 16676709 Lal16g0913 16 6015043 6018917 PCT
Lal10g0928 10 16672584 16676709 Lal15g0896 15 6745523 6749358 PCT
Lal10g0928 10 16672584 16676709 Lal23g0716 23 9803184 9807772 PCT