Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0927 ATGGAGATGCAGGACCAAATCAAAGGCTCAGGGTCAAACAATTCTCGCTCAGGTTGTAACAGCCATTCTACTGGTGGAACACAATCTGAGAATGTTGTTCAATCGCGGGATGTAACTTCTTCTGTAAACAACCACACCCCCAAGGTTAGGAAACCATATACCATTTCTAAGCAAAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCATTGAAATTGTATGGTCGCGGCTGGCGTCAAATTGAAGAGCATATAGGTACCAAAACTGCTGTTCAGATTCGAAGTCATGCTCAGAAATTTTTCTCTAAGGTTGTGCGGGAATCTGATAGCAGTGCTGAAACTTCAATACAGCCAATTGACATACCTCCTCCTCGTCCGAAGAGGAAACCCCTTCATCCATATCCCCGGAAATCAATTGGATCTTTGAAAGGACAGTCCATACCAAATGAATCAGGAATATCTCCGTCTTCAAACCTGGCAGTTGAAGAGAAAGACACTCATTCTCCGACCTCTATGCTATCTGCCTTTGGTTTGGAGGCATTTGGGCAATCACTTTCAGAGCAGACGAACAGATGTGTTTCACCGAATTCTTGCACCACTGATATTCGCTCACTCTGCTTGTCACCTGTTGAAAAGGACAATGAGTGCATGACATCCAATTCATCGGAGGAGGACAAGAAAGGATCTCTAGCTTCAGTTCCTCTATCCACCAGTTCAAAGCTACTCTTGCCCGTGAAATCTGAGTTGAGTTCCAAGGAAACTGAATGTTTCAAAGAATCTGCCAAAATTCCACATGTCACTTGTATTAAACTTTTTGGAAGAACCGTCTCTATGGTAGGGAATCAGAAGTCACTGAATGTAGATGAGGAGGAAAGTAATAAGCCAATTACTAATAAGCCTGATGAAGTGGATAATGTTGAGTATCAAAAACTTGGCCAAGCATGGTCATTGGAGCAAGTAGATATACAATTATCACTGGGATTGTGTAGTAGTAATTGTCATACAACTCCTGATGGAGGTGATGGAGGTAAAGTAGATTGCATAGAAGCCCCAAAGGAGGACCTGTGTTCCGGTGAATCTGCACTTGATGATTCTTTGCCATGTACTCAAATCTCGAGTTCCACGCCTCTTTATCCCTCTTTGAAAGCAAGAACAGGAGAGGAGGGAAATTCTTGCACTGGTTCTAATGCTGAATCAGTTAGTGGTATGGAGAATCAAGGCAAAAACTCAGATGCTGTTGATTCTCAGTATACAAAATCTCATCACAAGGAAGGAAAAGTATCCCAAAGGGGGTTTGTACCATACAAAAGATGCTTAGCTGAAAGAGATGCAAGTTCTTTAATTACCTCTTTGGAAGAGAGGGAAGCGCAACGAGCTCGTGTGTGCTCATAG 1401 0.4283 MEMQDQIKGSGSNNSRSGCNSHSTGGTQSENVVQSRDVTSSVNNHTPKVRKPYTISKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESDSSAETSIQPIDIPPPRPKRKPLHPYPRKSIGSLKGQSIPNESGISPSSNLAVEEKDTHSPTSMLSAFGLEAFGQSLSEQTNRCVSPNSCTTDIRSLCLSPVEKDNECMTSNSSEEDKKGSLASVPLSTSSKLLLPVKSELSSKETECFKESAKIPHVTCIKLFGRTVSMVGNQKSLNVDEEESNKPITNKPDEVDNVEYQKLGQAWSLEQVDIQLSLGLCSSNCHTTPDGGDGGKVDCIEAPKEDLCSGESALDDSLPCTQISSSTPLYPSLKARTGEEGNSCTGSNAESVSGMENQGKNSDAVDSQYTKSHHKEGKVSQRGFVPYKRCLAERDASSLITSLEEREAQRARVCS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0927 466 SMART sant 58 106 IPR001005 -
Lal10g0927 466 MobiDBLite consensus disorder prediction 1 62 - -
Lal10g0927 466 CDD SANT 61 104 IPR001005 -
Lal10g0927 466 MobiDBLite consensus disorder prediction 108 171 - -
Lal10g0927 466 Pfam Myb-like DNA-binding domain 59 102 IPR001005 -
Lal10g0927 466 PANTHER PROTEIN REVEILLE 7-RELATED 3 454 - -
Lal10g0927 466 MobiDBLite consensus disorder prediction 1 51 - -
Lal10g0927 466 SUPERFAMILY Homeodomain-like 53 107 IPR009057 -
Lal10g0927 466 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Lal10g0927 466 MobiDBLite consensus disorder prediction 216 235 - -
Lal10g0927 466 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Lal10g0927 466 MobiDBLite consensus disorder prediction 382 431 - -
Lal10g0927 466 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Lal10g0927 466 Gene3D - 61 108 - -
Lal10g0927 466 MobiDBLite consensus disorder prediction 382 417 - -
Lal10g0927 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Lal10g0927 466 PANTHER SWI/SNF COMPLEX-RELATED 3 454 - -
Lal10g0927 466 MobiDBLite consensus disorder prediction 145 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0927 Lal-Chr10 16652453 16657319 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal10g0927 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0927 - - lang:109338572 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0494 8 3375735 3378034 Lal10g0927 10 16652453 16657319 LSH
Lal25g0507 25 3584318 3588007 Lal10g0927 10 16652453 16657319 LSH