Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0915 ATGCAGATCTTAGAGGGACTTCTTAAGCTACCTGACAACAGAGAATGTGCAGATTGCAGGAACAAGGCACCGCGATGGGCGAGTGTGAACCTAGGAATTTTCATTTGTATGCAGTGTTCAGGAATCCACCGAAGTCTTGGAGTGCATATATCAAAGGTTCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAGTTTCCTTCATGCAATTTATGGGTAATGTGAAGGCAAACCAGCACTGGGAGGCAGAACTGCCACCAAATTTTGACAGAAATGGATACGGAATCGAGAAGTTTATTCGTAACAAGTATGCCGAGAAAAGATGGGCTTCAAAAGGTGGACATCATGCGGCTACAAAGTTAACTGATACAATCTTTAACTTCAATGAGTCACCAGCTGGTGGAACAAAGAGTGGTATTCCAAGAAGTAGGAGATTATCTCTAGAGGAAAGCATTCTTGTGAGCCATATGAAACAAATTCCGCCTCCAGTAACACGATCTCGTGAGGGCTCCTTAGATTTGCCGATGAAGATTTCAGTTTCGCCACCATTGAAGAGGCCATCTGTATCACTTGATTTTGATAATTTATCTGGAAAGAGCAAAGGCATTGTTGATCCTTTTGGCTTTAATGATAAAAAGGTTTCATCTGCACCTCCATCAAACTGGACAACCTTTGATTGTAAGATAACAATACCTGTATCATACATCTTAATCTTTCTTTCATATTATCTTATTCACTTTGTAATGATAGTTCTTAGAGACTCAACTTTTAGCTATTGA 780 0.4038 MQILEGLLKLPDNRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFMGNVKANQHWEAELPPNFDRNGYGIEKFIRNKYAEKRWASKGGHHAATKLTDTIFNFNESPAGGTKSGIPRSRRLSLEESILVSHMKQIPPPVTRSREGSLDLPMKISVSPPLKRPSVSLDFDNLSGKSKGIVDPFGFNDKKVSSAPPSNWTTFDCKITIPVSYILIFLSYYLIHFVMIVLRDSTFSY 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0915 259 SUPERFAMILY ArfGap/RecO-like zinc finger 2 111 IPR037278 -
Lal10g0915 259 CDD ArfGap 4 104 - -
Lal10g0915 259 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 2 230 IPR044520 GO:0005096
Lal10g0915 259 Gene3D Arf GTPase activating protein 1 116 IPR038508 -
Lal10g0915 259 Pfam Putative GTPase activating protein for Arf 3 112 IPR001164 GO:0005096
Lal10g0915 259 PRINTS HIV Rev interacting protein signature 13 32 IPR001164 GO:0005096
Lal10g0915 259 PRINTS HIV Rev interacting protein signature 32 49 IPR001164 GO:0005096
Lal10g0915 259 PRINTS HIV Rev interacting protein signature 53 74 IPR001164 GO:0005096
Lal10g0915 259 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 117 IPR001164 GO:0005096
Lal10g0915 259 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 2 230 - -
Lal10g0915 259 SMART arf_gap_3 2 117 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0915 Lal-Chr10 16560040 16561765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0915 4 104 C2H2 Transcription Factor Family AT4G05330 50.467 6.68e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0915 K12486 - gmx:100780727 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0915 10 16560040 16561765 Lal10g0915 10 16560040 16561765 ECH
Lal25g0514 25 3666629 3672306 Lal10g0915 10 16560040 16561765 LSH
Lal15g0877 15 6605197 6610339 Lal10g0915 10 16560040 16561765 PCT
Lal10g0915 10 16560040 16561765 Lal15g0877 15 6605197 6610339 PCT