Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0900 ATGGCAACTCGTAGATATGCTTTTGGAAGGGTTGATGAGGCTACTCATCCAGATTCCATGAGAGCAACCTTAGCTGAATTTGCTTCTACTTTCATCTTTGTCTTTGCAGGAGAAGGATCTGGCCTTGCTCTTGATAAGATATACGTGGATGAAGGTCTCTCAGCTGGCCAATTACTGGCATTAGCACTTGCACATGCCTTTGCACTATTTGCTGCTGTATCTGCTAGCATGCATGTATCCGGTGGCCATGTTAACCCCGCTGTGACTTTCGGTGCTCTCATCGGTGGCAGGATCTCCGTCGTCCGTGCCATCTACTATTGGATTGCTCAACTTCTCGGTGCTATAGTGGCTGCCCTTATTCTTAGGCTTGTCACTAATAACATGAGACCAAATTCCTTCCATGTGTCAGTTGGGCTTGGTGCAGGGCATGGTCTAGTATTAGAGATCATAATGACATTTGGGCTGATGTACACAGTATATGCTACAGCCATTGATCCCAAAAGGGGTACTAATGGTGCCCTTGCACCCTTAGCAATAGGACTCATTGTTGGGGCAAACATCCTTGTTGGTGGACCATTTGATGGAGCATGCATGAATCCTGCACTAGCTTTTGGGCCTTCATTGGTGGGTTGGAGATGGAAGTACCATTGGATTTACTGGGTTGGACCATTGATTGGAGCTGCATTGGCTTCTCTCATATATGAATATGTTGTAATCCCAACAGAACCTCCTCATCCTCACCAACCTTTGGCTCCTGAAGATTACTAG 768 0.4635 MATRRYAFGRVDEATHPDSMRATLAEFASTFIFVFAGEGSGLALDKIYVDEGLSAGQLLALALAHAFALFAAVSASMHVSGGHVNPAVTFGALIGGRISVVRAIYYWIAQLLGAIVAALILRLVTNNMRPNSFHVSVGLGAGHGLVLEIIMTFGLMYTVYATAIDPKRGTNGALAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWKYHWIYWVGPLIGAALASLIYEYVVIPTEPPHPHQPLAPEDY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0900 255 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 255 - -
Lal10g0900 255 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Lal10g0900 255 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0900 255 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0900 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0900 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0900 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0900 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0900 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0900 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0900 255 PANTHER AQUAPORIN-8 1 255 IPR034294 -
Lal10g0900 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lal10g0900 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal10g0900 255 Gene3D Glycerol uptake facilitator protein. 4 244 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0900 Lal-Chr10 16470790 16471723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0900 2 255 Major Intrinsic Protein MIP AT1G73190 71.970 7.22e-123 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0900 K09873 - gmx:100817450 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0521 8 3553110 3554784 Lal10g0900 10 16470790 16471723 LSH