Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0894 ATGAGAAACTCTGAAGCAACTCATGTAACTATGGAAATAGAGGCAAGCAAAGCAACAGGGAATGTAACAACACTTCCAGGGTTGAGCCCTTTGAGTGAGACAATTTGGAGAGAAAAGACAGACACAGAGATTATTGGAGATGTTTCAGCAAGGCTCACATGGAAGGATCTAACTGTGATGGTTACCCTTAGCAATGGAGAGACTCAGAATGTTTTGGAAGGTTTAACTGGCTATGCTGAACCTGGTACCTTCACTGCTCTAATGGGACCCTCAGGTTCTGGAAAATCTACTCTTCTTGATGCTCTTTCTAGTCGCCTAGCTGCAAATGCTTTTCTCTCTGGTACCATTCTTCTCAATGGCCGCAAAGCCAAACTCTCTTTTGGCACTGCCGCTTATGTGACACAAGATGACAACTTAATTGGTACCTTAACGGTAAGAGAAACAATCTCATACTCAGCAAGGCTTCGTTTACCTGATAAGATGCCATGGTCGGATAAAAGAGCTTTAGTTGAGAGTACCATAATTGCAATGGGTCTTCAAGATTGTGCTGACACAGTGATTGGGAACTGGCACTTGCGTGGGATCAGTGGTGGGGAGAAAAGAAGGGTTAGCATTGCTTTGGAAATCTTGATGAGGCCTAGGTTGCTTTTCCTTGATGAGCCAACCAGTGGCCTTGACAGTGCTTCTGCTTTCTTTGTGACACAAACACTACGTGCTTTGGCAAGAGATGGGAGAACTGTTATAGCTTCTATTCATCAACCTAGCAGTGAAGTGTTTGAACTATTTGACCAATTGTATTTACTTTCTGGTGGCAAGACTGTGTATTTTGGCCAAGCTTCTGAAGCATATGAGTTCTTTGCACATGCTGGTTTTCCATGTCCTGCTTTGAGGAACCCATCAGATCATTTCCTTAGATGTGTAAATTCTGACTTTGACAAAGTCAAGAGCACTCTTAAAGGGTCCATGAAACTAAGGTTTGAGGGAAGTGATGATCCCTTAGATAAGATCACTACTGCTGAAGCTATAAGAACTCTTCTTGACTTCTACCGCACTTCTCAGCAATCTTATGCTGCAAGACAAAAAGTTGATGAGATATCCAAAGTTAAGGGAACTGTTCTTGATGCAGGAGGAAGTCAAGCTAGTTTTTTCATGCAGTCTTATATCTTAACCAAACGCTCATTCATAAACATGTCAAGAGATTTTGGTTACTACTGGCTTAGGCTTGTTATCTACATTGTGGTCACTCTCTGCATTGGAACCATTTATTTGAATGTGGGCACAGGCTACAACTCAATTCTGGCTAGGGGTTCATGTGCTTCTTTTGTCTTTGGTTTTGTCACCTTCATGTCAATTGGTGGATTCCCTTCATTTGTTGAAGATATGAAGGCAAGTTTTGTTCCTGATGTTTTTCAAAGGGAGAGACTTAATGGACACTATGGTGTCCTTGGATTTGTCATAAGCAACACGATATCTGCAACACCGTTTCTGATATTGATCACATTTCTCTCCGGAACAATTTGTTACTTCATGGTTCGCCTGCATCCCGGCTTTTGGCATTACCTGTTCTTTGTGCTGTGCCTTTATGCCAGTGTCACAGTGGTTGAAAGCTTAATGATGGCAATAGCTAGTGTTGTTCCAAACTTCCTCATGGGCATCATAATTGGAGCAGGGATTCAGGGCATATTCATGTTGGTCTCTGGCTACTTTAGGCTCCCACATGATATCCCAAAGCCAGTTTGGCGCTACCCAATGTCATATATCAGTTTCCACTTTTGGGCATTACAGGGGCAATACCAAAATGACCTGAAGGGCTTGATATTCGACAACCAGACACCGGATCTTCCAAAGATACCGGGTGAATATATCCTCGAGTATGTGTTCCAGATTGATGTCAGTAGATCGAAGTGGATAGACTTGAGTGTAATCTTGAGCATGATCGTTATCTACCGCATTATATTCTTCATCATGATCAAAATCAATGAGGATGTGACCCCTTGGGTTAGAGGGTACTTAGCTAGGAGAAGAATGCAACAAAAGAGTGGAACTCAGAATACAACTATTGCACCTGATGTTCTCACTCAATCACCATCTCTAAGAACCTATATTTCCAGTCAAACAAAAAATGACACTTCCAGAAGCTAG 2142 0.4216 MRNSEATHVTMEIEASKATGNVTTLPGLSPLSETIWREKTDTEIIGDVSARLTWKDLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSDKRALVESTIIAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYEFFAHAGFPCPALRNPSDHFLRCVNSDFDKVKSTLKGSMKLRFEGSDDPLDKITTAEAIRTLLDFYRTSQQSYAARQKVDEISKVKGTVLDAGGSQASFFMQSYILTKRSFINMSRDFGYYWLRLVIYIVVTLCIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKASFVPDVFQRERLNGHYGVLGFVISNTISATPFLILITFLSGTICYFMVRLHPGFWHYLFFVLCLYASVTVVESLMMAIASVVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLKGLIFDNQTPDLPKIPGEYILEYVFQIDVSRSKWIDLSVILSMIVIYRIIFFIMIKINEDVTPWVRGYLARRRMQQKSGTQNTTIAPDVLTQSPSLRTYISSQTKNDTSRS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0894 713 CDD ABCG_EPDR 49 277 - -
Lal10g0894 713 Pfam ABC-2 type transporter 385 597 IPR013525 GO:0016020|GO:0140359
Lal10g0894 713 Pfam ABC-2 type transporter 252 310 IPR043926 GO:0140359
Lal10g0894 713 Pfam ABC transporter 74 223 IPR003439 GO:0005524
Lal10g0894 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 293 IPR027417 -
Lal10g0894 713 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524
Lal10g0894 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 52 295 IPR003439 GO:0005524
Lal10g0894 713 Gene3D - 46 289 IPR027417 -
Lal10g0894 713 PANTHER OS04G0528300 PROTEIN 3 703 - -
Lal10g0894 713 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 3 703 - -
Lal10g0894 713 SMART AAA_5 81 252 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0894 Lal-Chr10 16432823 16438559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0894 82 256 Calmodulin-binding Proteins AT2G36910 33.333 2.30e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0894 K05681 - gmx:100803731 1283.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0526 8 3590739 3596304 Lal10g0894 10 16432823 16438559 LSH
Lal25g0524 25 3752158 3761987 Lal10g0894 10 16432823 16438559 LSH