Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0878 ATGGCCTTAGGAAAATCAAGTAAAGTTCCTCAAAAAGCACTTCTTAAACAAATTCTGAAGAGATGCTCAAGCTTAGGGAAGAAACAAGGCTATGATAATGAACAAGGGATCCTTTTAGATGTTCCAAAAGGTCACTTTGTTGTGTATGTTGGAGAAAACAGAAGCAGGTACATTGTTCCTATCTCTATTCTAACTACACCACAGTTCCAAACCTTGCTCCACCAAGCTGAAGAAGAGTTTGGCTTTGATCATGAAAAGGGTCTCACAATTCCTTGTGAAGAAGATGTTTTTGAGTTATCTCTTACATCCATATTAAGATGA 321 0.3738 MALGKSSKVPQKALLKQILKRCSSLGKKQGYDNEQGILLDVPKGHFVVYVGENRSRYIVPISILTTPQFQTLLHQAEEEFGFDHEKGLTIPCEEDVFELSLTSILR 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0878 106 Pfam Auxin responsive protein 35 102 IPR003676 GO:0009733
Lal10g0878 106 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 106 IPR003676 GO:0009733
Lal10g0878 106 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0878 Lal-Chr10 16311661 16311981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0878 3 106 Calmodulin-binding Proteins AT4G34750 38.462 1.67e-19 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0878 K14488 - tcc:18591528 168.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0878 10 16311661 16311981 Lal15g1507 15 17201197 17201502 ECH
Lal10g0878 10 16311661 16311981 Lal23g1461 23 14967820 14969256 ECH
Lal10g0878 10 16311661 16311981 Lal10g0878 10 16311661 16311981 ECH