Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0877 ATGTCAACAACAAAATGCAGCACCATCCGCCACATTGTTCGGCTCCGCCAGTTGCTCCGCCGTTGGCGAAACAAGGCACGCATTTCATCAGCCAATCGCACACCGTCAGATGTTCCCACAGGACACGTGGCAGTCTGTGTTGGCATCAACTGTACCAGATTTGTTGTACCCGTAACGTACCTGAACCACCCTATCTTCAAGAAGCTTCTAGTACAAGCGGAGGAAGAGTTTGGTTTCTCTAACCATGGACCCTTGGCTATTCCCTGCGACGAAGATGTGTTTCAACAGATTCTCCGGTTTATTTCCCGGTCTGAACCGGGAAAGAAATCGAACCGGTTGCTTAATATGGAGATTGAGGATTTTCAAAGGTATTGCCACTTGGGTGTTAGGACTAATCTGAATTTCTGGCCAGAAACTCGACCACTACTCCCTGGCTTTACTGATAAAACTATTTGGTAG 459 0.4771 MSTTKCSTIRHIVRLRQLLRRWRNKARISSANRTPSDVPTGHVAVCVGINCTRFVVPVTYLNHPIFKKLLVQAEEEFGFSNHGPLAIPCDEDVFQQILRFISRSEPGKKSNRLLNMEIEDFQRYCHLGVRTNLNFWPETRPLLPGFTDKTIW 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0877 152 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 5 145 IPR003676 GO:0009733
Lal10g0877 152 Pfam Auxin responsive protein 14 100 IPR003676 GO:0009733
Lal10g0877 152 PANTHER SMALL AUXIN-UP RNA-RELATED 5 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0877 Lal-Chr10 16298949 16299407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0877 5 151 Calmodulin-binding Proteins AT4G34750 49.333 1.71e-45 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0877 K14488 - gmx:100782525 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0877 10 16298949 16299407 Lal10g0877 10 16298949 16299407 ECH
Lal8g0545 8 3742893 3743348 Lal10g0877 10 16298949 16299407 LSH
Lal10g0877 10 16298949 16299407 Lal21g0119 21 818097 818462 PCT
Lal21g0119 21 818097 818462 Lal10g0877 10 16298949 16299407 PCT