Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0872 ATGAACAGAATTCGGTTCCCTTGGATTGCAACAATGGCGGAAAATATAGGCAAAGGCAACAATCTCCAACCTTCTTCTGCTTCAACAACAACAACAACGAATGTTTCCAACACTCGTAGTTTCTGGCCTTCACTCCTTCGTTGGATTCCTACTTCAACCGATCACATCATCAATTCAGAGAAGCGTCTTCTTTCTCTTGTCAAGACTCCCTATGTTCAAGAACAAGTTAATATTGGCTCTGGTCCACCTGATTCCAGAGTTAGATGGTTCCGTTCATCAAGCAATGAGCCACAGTTTATTAATACTGTTACATTTGACAGTAAAGAGGATTCTCCTACGCTTGTAATGGTTCATGGATATGCTGCTTCTCAGGGTTTTTTTTTCCGTAATTTTGATGCTCTTGCTAGTCGTTTTAGAGTCATTGCTATTGATCAACTAGGCTGGGGTGGATCTAGTAGGCCAGACTTTACATGCAGAACCACTGAAGAAACTGAGTCATGGTTCATCGATTCATTTGAGGAATGGAGAAAAGCCAAAAACTTGAGCAATTTTATACTACTTGGGCATTCTTTTGGCGGTTATATTGCTTCCAAGTATGCGCTTAAGCACCCTGAGCACGTACAGCACTTGATTTTGGTAGGACCTGCTGGATTTTCATCAGAAACAGAGAGGATTACAAAGTTCTTAGAAACATGGAAAGGATCAATTCTTAACCGTATATGGGAATCTGGTTTTACACCTCTTAAAATTATCAGGGGTTTAGGTCCATTGGGTCCTGATATAGTCCGCCGGTATACAAGTGGTAGGTTTGTTAAATATACAACTGGGGAAATACTGAATGAATCTGAAACGACGTTGCTGACAGATTACGTATACCATACTTTAGCTGCCAAACCTAGTGGCGAGCTGTGCTTAAAGTATATATTTTCATTTGGAGCATTTGCTAGGACGCCCCTTCTTCACAGTGCATCAGAGTGGAAGGTGCCCACCACTTTCATATATGGCTTCCAAGACTGGATGAATTATGAAGGGGCCCAAGAAGCTCGGAAGCATATGAAGGTTCCATGTGAAATCATCAGGGTTCCGCAGGCTGGGCACTTTGTGTTTATTGACAACCCAACTAGCTTCCATTCAGCCATGTTTTATGCTTGTCGAAGGTATCTTAGGCCTGATCCTGACAGTGAGTCCCTTCCTGAAGGGCTAACATCTGCATAG 1215 0.4239 MNRIRFPWIATMAENIGKGNNLQPSSASTTTTTNVSNTRSFWPSLLRWIPTSTDHIINSEKRLLSLVKTPYVQEQVNIGSGPPDSRVRWFRSSSNEPQFINTVTFDSKEDSPTLVMVHGYAASQGFFFRNFDALASRFRVIAIDQLGWGGSSRPDFTCRTTEETESWFIDSFEEWRKAKNLSNFILLGHSFGGYIASKYALKHPEHVQHLILVGPAGFSSETERITKFLETWKGSILNRIWESGFTPLKIIRGLGPLGPDIVRRYTSGRFVKYTTGEILNESETTLLTDYVYHTLAAKPSGELCLKYIFSFGAFARTPLLHSASEWKVPTTFIYGFQDWMNYEGAQEARKHMKVPCEIIRVPQAGHFVFIDNPTSFHSAMFYACRRYLRPDPDSESLPEGLTSA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0872 404 PRINTS Epoxide hydrolase signature 137 152 IPR000639 GO:0003824
Lal10g0872 404 PRINTS Epoxide hydrolase signature 186 199 IPR000639 GO:0003824
Lal10g0872 404 PRINTS Epoxide hydrolase signature 200 213 IPR000639 GO:0003824
Lal10g0872 404 PRINTS Epoxide hydrolase signature 328 344 IPR000639 GO:0003824
Lal10g0872 404 PRINTS Epoxide hydrolase signature 361 383 IPR000639 GO:0003824
Lal10g0872 404 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN-RELATED 21 397 - -
Lal10g0872 404 Gene3D alpha/beta hydrolase 98 381 IPR029058 -
Lal10g0872 404 PRINTS Alpha/beta hydrolase fold signature 137 152 IPR000073 -
Lal10g0872 404 PRINTS Alpha/beta hydrolase fold signature 186 199 IPR000073 -
Lal10g0872 404 PRINTS Alpha/beta hydrolase fold signature 200 213 IPR000073 -
Lal10g0872 404 PANTHER RE40534P-RELATED 21 397 - -
Lal10g0872 404 Pfam alpha/beta hydrolase fold 112 224 IPR000073 -
Lal10g0872 404 SUPERFAMILY alpha/beta-Hydrolases 101 380 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0872 Lal-Chr10 16224646 16230304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0872 92 219 Acyl Lipid Metabolism Gene Families AT1G64670 32.117 3.63e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0872 - - gmx:100789925 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0872 10 16224646 16230304 Lal10g0872 10 16224646 16230304 ECH
Lal10g0872 10 16224646 16230304 Lal17g0069 17 412418 416935 PCT
Lal17g0069 17 412418 416935 Lal10g0872 10 16224646 16230304 PCT