Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0867 ATGGGGACCAAAGCAAAGAAAGCTATGAACAAGAATTTGAAAAAGGCTAATTCTAAAAAGCTATCTGATGGTGCTGATTTTTTGCCATTGGAAGGTGGTGCTGCTCGCGAAATTCACGAAGAAAAACAACCGCGGGAGGGTACTGCTAAGGTTTTGTATATTGGTAGGATTCCACATGGGTTCTATGAGAAGGAGATGAATGGTTATTTTGGACAATTCGGAACCATCAAGAGATTGAGAATTGCAAGAAATAAAAAGACAGGACAATCAAAGCATTATGGGTTCGTAGAATTCGAATCACCCGAGGTAGCAAAAATTGTAGCTGATACTATGCACAATTATCTGCTTTTTGAACACCTTCTCCAGGTTCACTTGATACCCCCAGAGCATGTTCACCCAAAATTATGGAGAGGTTTCAATTATCGTTACAAGCCATTGGACACTGTCCAAATTGAAAAGGAGCGACATGACAAGGAAAGAACATTGGAAGAACACAATAACTTGGTGGAGAAGATTCTGAAGCGTGACAAAAAACGACGGAAAATGATAGAGGCTGCTGGCATTGATTATGAATGCCCTGAGATTGTGGGTAATGTCCAGCCTGCTCCAAAGAAAATAAAGTTTGAAGACTAA 633 0.4028 MGTKAKKAMNKNLKKANSKKLSDGADFLPLEGGAAREIHEEKQPREGTAKVLYIGRIPHGFYEKEMNGYFGQFGTIKRLRIARNKKTGQSKHYGFVEFESPEVAKIVADTMHNYLLFEHLLQVHLIPPEHVHPKLWRGFNYRYKPLDTVQIEKERHDKERTLEEHNNLVEKILKRDKKRRKMIEAAGIDYECPEIVGNVQPAPKKIKFED 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0867 210 SUPERFAMILY RNA-binding domain, RBD 44 139 IPR035979 GO:0003676
Lal10g0867 210 PANTHER - 1 209 - -
Lal10g0867 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 119 IPR000504 GO:0003723
Lal10g0867 210 Gene3D - 3 125 IPR012677 -
Lal10g0867 210 Coils Coil 151 175 - -
Lal10g0867 210 SMART rrm1_1 51 124 IPR000504 GO:0003723
Lal10g0867 210 CDD RRM_NIFK_like 51 124 - -
Lal10g0867 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Lal10g0867 210 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0867 Lal-Chr10 16179987 16183422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0867 26 130 Eukaryotic Initiation Factors Gene Family AT1G49760 28.972 4.84e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0867 K14838 - gmx:100814276 335.109