Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0864 ATGTTTCCAAACCAAGCCTTTTCTTCTGGATCCTTCGCCGAGATGTTATCTCAGACTCCGCTTTTACCTCATAGCTATAACGAATCGGTAGGACAAAATGAGTTGAAGTTTATCACAAATATAGGTGACACAGTGACTATGCAGACTATTGATGAACATTCCAATGCTGAAATTAGTGATCCAGCAAGCAACTCTTTTGTTGGTTCTAGAGAATCCCATGTTGTTCCAAGGACACAATTTGGTAGTGACCAAAATATACAGTGCCAGGGTTTGTCTCTCAGCCTCGGGACAGTGATGATGCCTTCCATTGCATCTGTCCCTCCCTTTCATTACCAATATCCTGACAATTGTTTCTCCTCATTAATGAATTCTTCTACTCCAAACGTAAAGGGGAATGCATCGGTTAACGATGATGAGGCCAGTCTTAAGGAATTGAGAGATGCTGAATGCATGGCATCTGTATCTTCTGGAGGATTTCACAACACTATCAAAAGGAAGGGTTTGTATCATCCATACTCCTCAACCTGCCTCAGTGAAGGTCAATCGGATTCATTCTTGCATGGATCAGCAGGTTTTACGAACACGGTTTTAAACTCTAAATATCTTAAGGCAGCACAGGAGTTGCTTGATGAAATTGTTAATGTCCGAAAGGCTTTGAAAGAAACTGAATTGGAAAAGCAACAAAGTTTCTGTGATATCGGGTTAGATGGATCCAAAGATGATGGAAACACTAACAGTCAATCTATGAAAGTATCTTCAGTCCTCACTGGTTCTACTACAAACACTTCATCCGAGCTATCACCTGCAGAACGACAGAATTTGTTGGACAAGAAGACAAAACTTTTGTCCATGTTAGATGAGGTTGATAAAAGATATCGACAATACTGCCACCAGATGCAGATTGTGGTGTCATCTTTTGATATGGTTACTGGATGTGGAGCAGCTGAACCATATACAGCACTTGCTTTGTGTACAATTTCTCGCCACTTTCGCTCTCTGCGTGATGCCATTAGCGGCCAAATTCAAGTGATTCAAAGGAGTCTTGGAGAACAAGAGGGAATACCTCGTCTTCGCTATGTTGATCAGAAGCTTAGACAACAAAAGGCCCTTCAGCAGCTCGGTGTAACGCGACAAGATTGGAGGCCTCAGAGGGGACTTCCTGAAAGCTCTGTTTCAATACTTCGTGCATGGTTGTTTGAGCATTTCCTAAATCCTTATCCAAAGGATTCAGAGAAAATCATGCTTGCAAGGCAAACAGGCTTGAGCAGAAACCAGGTGGCAAATTGGTTCATTAATGCGAGGGTGCGTCTATGGAAGCCAATGATTGAAGATATATACAAAGAGGAATTTGGTGATGCTGAGATGAGCAACAACAATCTTTCATCAGAAAATATTCCCAACAAAGCTCCAAAAGTTCAAGACTCTGATAATAATGATGTAGGAGAAAATGTGTTTAATAATAATAATATGAACAACAATGACCCTTATTCAAGTGCACCTATCACAATAAAACAGAACAACAATTGTTGCAGCCTAATTGCTTCTACTACTCCTGCCACATACGATTTATCAGAGTTGGGTAACTTTTCTATGGGCAGCCACATGTCTCTTGCATTAGAGTTGAAGAACTGTGAAAGGAATGAATTTGGTGTGTCCAATGATGATATCTATAAAAGAAGTAATGTGACATTGGCTTCTTCTTCTGAGACTGATTTGCTAGATTATAATCTCAAAGACCCTGAAAAGCAACAACACAAGTTTGGTAATCCTCATTTATTACATGAGTTTATTGTCTGA 1797 0.4023 MFPNQAFSSGSFAEMLSQTPLLPHSYNESVGQNELKFITNIGDTVTMQTIDEHSNAEISDPASNSFVGSRESHVVPRTQFGSDQNIQCQGLSLSLGTVMMPSIASVPPFHYQYPDNCFSSLMNSSTPNVKGNASVNDDEASLKELRDAECMASVSSGGFHNTIKRKGLYHPYSSTCLSEGQSDSFLHGSAGFTNTVLNSKYLKAAQELLDEIVNVRKALKETELEKQQSFCDIGLDGSKDDGNTNSQSMKVSSVLTGSTTNTSSELSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVTGCGAAEPYTALALCTISRHFRSLRDAISGQIQVIQRSLGEQEGIPRLRYVDQKLRQQKALQQLGVTRQDWRPQRGLPESSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLSRNQVANWFINARVRLWKPMIEDIYKEEFGDAEMSNNNLSSENIPNKAPKVQDSDNNDVGENVFNNNNMNNNDPYSSAPITIKQNNNCCSLIASTTPATYDLSELGNFSMGSHMSLALELKNCERNEFGVSNDDIYKRSNVTLASSSETDLLDYNLKDPEKQQHKFGNPHLLHEFIV 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0864 598 Gene3D - 376 454 - -
Lal10g0864 598 MobiDBLite consensus disorder prediction 241 270 - -
Lal10g0864 598 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 24 562 - -
Lal10g0864 598 SMART prehox3 190 339 IPR006563 -
Lal10g0864 598 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 24 562 - -
Lal10g0864 598 Coils Coil 202 225 - -
Lal10g0864 598 Pfam Associated with HOX 196 338 IPR006563 -
Lal10g0864 598 SMART HOX_1 380 444 IPR001356 GO:0003677
Lal10g0864 598 CDD homeodomain 380 441 IPR001356 GO:0003677
Lal10g0864 598 Pfam Homeobox KN domain 397 436 IPR008422 GO:0003677|GO:0006355
Lal10g0864 598 ProSiteProfiles 'Homeobox' domain profile. 377 440 IPR001356 GO:0003677
Lal10g0864 598 SUPERFAMILY Homeodomain-like 381 445 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0864 Lal-Chr10 16157930 16162433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0864 190 598 Homeobox Transcription Factor Family AT2G16400 49.644 1.25e-117 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lal10g0864 POX 2.5e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0864 - - gmx:100775682 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0864 10 16157930 16162433 Lal10g0864 10 16157930 16162433 ECH
Lal25g0542 25 3957838 3963436 Lal10g0864 10 16157930 16162433 LSH
Lal10g0864 10 16157930 16162433 Lal21g0139 21 967093 971671 PCT
Lal17g0073 17 448482 457513 Lal10g0864 10 16157930 16162433 PCT
Lal21g0140 21 971859 975256 Lal10g0864 10 16157930 16162433 PCT
Lal4g0089 4 541388 545016 Lal10g0864 10 16157930 16162433 PCT