Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0800 ATGGAGATCACAGAAGAACAGAGAAAACGAGCCGAAACTAACCGTTTAGCAGCCATAGCAAAACGAAAAGCACTCTCACAATCTCAACCAAATCAACAACAACAACAACAACACCCTTGGCACCTTTTCAAGTGTCAAAAGCACCCTCACAATCTAATTCCCCAAAAACTACCCTCACCGGTACCCCGCAAATTCCTCGCCCGCCTCGAAATATGCTCCCCGGACTCTTTCTCCGTCACCCCTCTCCCCCTCTCAAATTCCCCATTCCCCGGCCGAGACTATTGTTTCGCCACCCTCACTCCCATACTGTCACACGTAATGTTATCGCATTATACCCAAATTAACGCTGGCGGGTGTGCCTGTGTCTACAGGCTTGATGAATACAATGCTGTTCTTAAGTGCTTGAAGGCAGCGGCGGAGATTGAAGTGGAGGAGATTCCATGGGGAACTTTTAATGTTGTCGAGAGACTATCACATTCGTCGCGGTGGATGCCAGTTAGGCCTGAGCATTTGAGTGATGATAAGGTTGATGAGTTGATTGCGAAGTTGCCGAGGAGTTTGATTGATGCTTTGTTGCCTTTTCAATTGGATGGGTTGAGGTTTGGTCTCAGGAGGGGCGGCCGATGCCTCATTGCAGATGAAATGGGGTTAGGGAAAACACTACAGGCTATTGCTATAGCAGGGTGTTTCATGGATGAAGGTTCTATACTTGTTGTTTGCCCAGCTGTCTTGCGATTTTCATGGGCGGAAGAATTGGAGCGTTGGCTTCCTTTCTGTTTGCCTGCTGATATCCACCTGGTCTTTGGCCATCAAGATAATCCTGTACATTTAAAAAGACGTCCTCGAGTTGTGGTTGTTTCTTATACCATGCTCCATCGTCTGAGGAAGAGCATGCTTGAGCGCGAATGGGCTCTCTTGATTGTTGACGAATCCCATCATGTGCGATGTACAAAGAAAAAATCAGAACCTGGCGAGATACAGACTGTTCTTGATGTGGCTTCGAAAGTCAACCGTATTGTTCTGCTATCAGGAACACCTTCTTTGTCAAGACCGTATGACATTTTTCATCAAGTAAATATGTTATGGCCTGGTTTGCTGGGGAAGTCTAAGTATGAGTTTGCAAAAACTTATTGTGATTTCAAATATGTCAAGGGCTTCCAAGGAAAATATTTTGCAGATTGCTCCAAGGGCATTCGGTTGGAGGAGTTGAATGTGTTACTAAAGCAAACTGTTATGATAAGGCGTTTGAAGGAACATGTGTTGCAGCAGTTACCTCCAAAACGGCGGCAAATTATAAGACTATTGTTGAAGAGATCAGATATAGTTGCTGCAAAAAATGCAGTTGGGGCATTGAAGTTTGATGGTTCTGAAAGCTCAAGTGAAGAAGACTTCGAAAGTTTGGATGAACCTGATGGGAAGCTTTCTTATCAGGAACTTGGAGTTGCAAAAATTTCTGGATTTCGAGAGTGGCTCTCCCTCCACCCACTCATTGCAGAACCAGAGAATGCTTCAAAGATGATAATTTTTGCTCACCACCATAGAGTTCTTGATGGACTACAGGAATTTGTATGTGAGAAAGGGATAGGTTTTGTGAGAATTGATGGAACTACTCTTGCCAGAGATAGACAATCAGCAGTAGTGTCATTTCGTTCCTCACCAGAGGTTAAAATTGCGATAATAGGTATTTTAGCAGCAGGTTTTGGACTTGATTTCTCAACAGCACAAGATGTTGTGTTCTTGGAGCTACCCCAGTCCCCAAGTGTGATGCTTCAGGCTGAGGACAGAGCTCATCGACGAGGTCAAACAAATGCGGTTAATGTATACATATTTTCAGCAAAAGATACATTGGATGAGTCGCTTTGGAAAATTTTGAACAAAAGTTTGCACCGTGTGTCATCTACAACGGATGGCAAATATGATGCAATGAAAGAGATAGAGGTTGAAGGTATTTCTTATTTAGACAGATCGTTGAAAGCTGATAGTTGTCAAAAAGAATCTGTGTGCAAGAATGCATCAAGTGAAACACCATTGGATAACCAATCTGCCCCAGTAAATTCTAAGGAACCAGAAGCAAATCAAGCTGATAAATCTGATGAGTGTATTTCTTTTGCAAATAAATCACTTTCTACTGCTAATATTGCAAATGATAATGTTTCCAGCGTAGATTTAGGCAATGATTCAGTTTCGGATGAAAATCTTGATGTAGATGTTTTTAATGCTGAGGAGAGATGTTCTGAGAAGAGTTTTGAAGAGAAAGATCAAATAACAGAGTTGCAAGATAAGAAATTGATCCCAACAACAGAAGCAGATGGCAACCTGGCGGTTGATGTGGTTGAAGCTACTGGACATTGCTCTAGTCAAGCTGATTCTCTGCGATTTGAGGTGAGCCCATACACCGGAAGGATCCACTTGTATACTTGCATTTTGGCTACAGATACAAGACCACAGCCACTTTATCAAAATTTCCGACCAGAGGAACTTGACTTGCTAAGTTCTGATGCTGATGATGAAGAGATGAAGATAGAATCTGCATCTGTCAAGGACAACACTGCTTATAGGCATGCTCTTGTGGAATTTGCAAATGAGTGGAAGAAGTTGAGGCCAATTGAACGCAAGAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCGGTTGAATTGTGCTACTTATACGAAAGTAATAACCACAACAACAAGGGATTATTAAATGGTGGAAGTAAACGACGCATGACGCCTTTAATGGATATTAGCCATCCTTTACCATCAGATGCTGTTTGGAAAAAGGTTTATCTGCGTGGCCACGGCAAGAAGGAAAAGGAATACACTCAAGGCTGGAGTCTGACAGATGTTCCACTCTGCAAGCTTTGTCAAGGGCAGTGCGTGAGTAGCAATGCTAAGGCTCCTGAATATTTTGAAGATCTTTTTTGTAATCTGGTCTGCTATGAAGAGTATCGCATAAGAACTAGCAGCAGATTCATCCGTCATGAACTTTTCCAAATTGAACGTGGTGTGTGCACAATATGCCAATTGGATTGTCATAAGCTTGTTCAGCATATAAAACCTTTATCATTGGAGAGGCGGCGAGAATACATTCAGAAAGTAGCACCAAAAGTTGCAAAGCGAAAAAACATGCTTGAGAAGCTTGTCAATGATCCAACCGAAGGCAACGCATGGCATGCTGATCATATCATTGCAGTATATCAGGGTGGAGGTGAGTGCAAACTGGAGAATATGAGGACTCTTTGTGTGGCATGCCATCATGATGTTACTGCTGCACAGTGTGCTGAACGACGCATAGTAAGAGTAAATGCCAGGAAACAACTGAAAGAGGTAATGACTAAGTTGAAAAATGATATGAAGGGTGCTGCTGGCTCTAATATTGATGTACAAGGAAGTAGTATACTTGAGGATGAGCTTTTAGTCAAGGTTCCAGGAAGTGCATATACTCTAGCTAACAAAAGCTAA 3465 0.4245 MEITEEQRKRAETNRLAAIAKRKALSQSQPNQQQQQQHPWHLFKCQKHPHNLIPQKLPSPVPRKFLARLEICSPDSFSVTPLPLSNSPFPGRDYCFATLTPILSHVMLSHYTQINAGGCACVYRLDEYNAVLKCLKAAAEIEVEEIPWGTFNVVERLSHSSRWMPVRPEHLSDDKVDELIAKLPRSLIDALLPFQLDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFMDEGSILVVCPAVLRFSWAEELERWLPFCLPADIHLVFGHQDNPVHLKRRPRVVVVSYTMLHRLRKSMLEREWALLIVDESHHVRCTKKKSEPGEIQTVLDVASKVNRIVLLSGTPSLSRPYDIFHQVNMLWPGLLGKSKYEFAKTYCDFKYVKGFQGKYFADCSKGIRLEELNVLLKQTVMIRRLKEHVLQQLPPKRRQIIRLLLKRSDIVAAKNAVGALKFDGSESSSEEDFESLDEPDGKLSYQELGVAKISGFREWLSLHPLIAEPENASKMIIFAHHHRVLDGLQEFVCEKGIGFVRIDGTTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQSPSVMLQAEDRAHRRGQTNAVNVYIFSAKDTLDESLWKILNKSLHRVSSTTDGKYDAMKEIEVEGISYLDRSLKADSCQKESVCKNASSETPLDNQSAPVNSKEPEANQADKSDECISFANKSLSTANIANDNVSSVDLGNDSVSDENLDVDVFNAEERCSEKSFEEKDQITELQDKKLIPTTEADGNLAVDVVEATGHCSSQADSLRFEVSPYTGRIHLYTCILATDTRPQPLYQNFRPEELDLLSSDADDEEMKIESASVKDNTAYRHALVEFANEWKKLRPIERKKLLGKPLQLPLAVELCYLYESNNHNNKGLLNGGSKRRMTPLMDISHPLPSDAVWKKVYLRGHGKKEKEYTQGWSLTDVPLCKLCQGQCVSSNAKAPEYFEDLFCNLVCYEEYRIRTSSRFIRHELFQIERGVCTICQLDCHKLVQHIKPLSLERRREYIQKVAPKVAKRKNMLEKLVNDPTEGNAWHADHIIAVYQGGGECKLENMRTLCVACHHDVTAAQCAERRIVRVNARKQLKEVMTKLKNDMKGAAGSNIDVQGSSILEDELLVKVPGSAYTLANKS 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0800 1154 Pfam Helicase conserved C-terminal domain 496 600 IPR001650 -
Lal10g0800 1154 CDD SF2_C_SNF 482 610 - -
Lal10g0800 1154 Gene3D - 416 686 IPR027417 -
Lal10g0800 1154 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 492 646 IPR001650 -
Lal10g0800 1154 Gene3D - 166 409 IPR038718 -
Lal10g0800 1154 MobiDBLite consensus disorder prediction 20 39 - -
Lal10g0800 1154 Pfam HNH endonuclease 1056 1088 IPR002711 GO:0003676|GO:0004519
Lal10g0800 1154 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1112 - -
Lal10g0800 1154 SMART ultradead3 187 383 IPR014001 -
Lal10g0800 1154 MobiDBLite consensus disorder prediction 24 39 - -
Lal10g0800 1154 MobiDBLite consensus disorder prediction 669 697 - -
Lal10g0800 1154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 415 IPR027417 -
Lal10g0800 1154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 652 IPR027417 -
Lal10g0800 1154 SMART helicmild6 517 600 IPR001650 -
Lal10g0800 1154 Gene3D - 981 1118 - -
Lal10g0800 1154 MobiDBLite consensus disorder prediction 669 690 - -
Lal10g0800 1154 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 364 IPR014001 -
Lal10g0800 1154 CDD HNHc 1050 1090 IPR003615 -
Lal10g0800 1154 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1112 - -
Lal10g0800 1154 Pfam SNF2-related domain 209 439 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0800 Lal-Chr10 15718436 15723059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0800 505 653 RAD5 or RAD16-like Gene Family AT1G11100 33.775 3.51e-17 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal10g0800 SNF2_N 8.9e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0800 K25861 - gmx:100788690 1677.14