Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0797 ATGGCATGCGAGAGTTGTGGGAATGAAGGAAGGTTAAATGTTAGAAGGCCTCACTTCTATGAGGTTTATTCTTCTACCTCTACATCTGAGAGACTGAAAATTCCAGCTGGATTTTTACGTTACATGGAGAGCTGTACATATGACCTAGTTTCATTAGTAGGTGCTAATGGACATATGTGGCCTATTCGATTAGTTAAGCAGGACAATGATCTATTCTTTCATCATGGATGGGCAACATTTGCGGAAGATCATCAATTGGAATGTGGCGACCTCCTAGTTTTCAGATATGATGGCCACTTGCATTTCACCGTGCAAGTATTCGATAAAAGCAGATGTGAGAAAGAAACAGCATTTCATTCTCAATGCAATCAAACTTCTTGCGAGTTTGATAGTATTAATGGACATAAAAGAGACAGGAAGGAGAATTCTTATTTGGATGCTGTTGGTAAAGAACTAACACAATATGAAATAGTAAAACCAATTAGTGTGTTCAGAGAAACAGAAGAAACCTACAAAGAATGTTCAGCTAATGATGTCCCTGAACTTTTTCACATGAAAAATAGCAATGCATATGAAGAGGCTGCCATCATGTGTAGAGGTGGGAAGGAAGATGATCGTTATATTCTCAATGGAGTTTCAATATCAAATTTATCAGCACAAGACGAGAAAAAAGTTGCTCGGTCATTTACTTCTCCATTTCCGTATTTCGTGAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATCCCATACCAGTTTTCCATGGTCCATCTTCCTAACAGCAAGATAAAGATTATTCTTCATAATTTGAAAGGAGAACATTGGACTGTTAATTCTGTGCCAACAACTAGAGTACATACAAGTCACACTCTTTGTGGAGGATGGATGGCTTTTGTTCGTGGCAATAACATAAAGGTTGGAGATATCTGCATTTTTGAACTTGTACATGAGTGTGAATTGCGTGTTCGAATTGCTGGGGTTGGAAAAGATGGACTTGACAGCCAGGTTGAGAAACTAGCAAGTAGTGGGCCTGGTGCAGGACATGCTATCACTTGCCATAAGACTACCACATATATGCCAACGAATTCTAAAGTCAGCTCAAAGTGTGTAAGAAAAGTTGATCAATCAGATAAAAAGTATTCAAAGAATGGTCAAGAAGCTACTTTATCCATTGATTTGAAGAAGTCTGGTAGAGCTTCAAATGCCTCCAAGAAGATGGGGCTTTGCCCTCAGTCAAAAGTTGCCCATAAAAAGCTGGTTGTTCAGAGGAGGCATCGTGTTGAAGATGAACTTAGTGCACATGCTAAAGCTGGTTTGAGAATGCTGTTTACACTTGATGAACAAAGAGTAGCTCAAGCATTCAATTCACCTTTTCCTAGTTTTGTAAAAATCATGAAAATGTTCAATGTCAGTGGATCATATACTTTGAAAATCCCGTACCAGTTCTCCGCTGCACATCTCCCTTCCTACAAAACTGAAGTTATGCTTCGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTTCCAGATGCTAAAGGCAGAACAGTACACACATTCTGTGGGGGATGGATGGCGTTTGTTCGTGACAATGACATCAATTTTGGAGACACTTGCATCTTTGAACTCGTTGCTCAGTGTGAGATGCAGGTTTATATATCTGGGGTTGGAAAGGAAGGGCTTGACCATCACAATGAACAAGTGAAACTAAATAGATTAGCCACCATTCCATCTACCTGCTAA 1755 0.3937 MACESCGNEGRLNVRRPHFYEVYSSTSTSERLKIPAGFLRYMESCTYDLVSLVGANGHMWPIRLVKQDNDLFFHHGWATFAEDHQLECGDLLVFRYDGHLHFTVQVFDKSRCEKETAFHSQCNQTSCEFDSINGHKRDRKENSYLDAVGKELTQYEIVKPISVFRETEETYKECSANDVPELFHMKNSNAYEEAAIMCRGGKEDDRYILNGVSISNLSAQDEKKVARSFTSPFPYFVRIMKSFNVSGSYTLNIPYQFSMVHLPNSKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHECELRVRIAGVGKDGLDSQVEKLASSGPGAGHAITCHKTTTYMPTNSKVSSKCVRKVDQSDKKYSKNGQEATLSIDLKKSGRASNASKKMGLCPQSKVAHKKLVVQRRHRVEDELSAHAKAGLRMLFTLDEQRVAQAFNSPFPSFVKIMKMFNVSGSYTLKIPYQFSAAHLPSYKTEVMLRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQCEMQVYISGVGKEGLDHHNEQVKLNRLATIPSTC 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0797 584 CDD B3_DNA 234 328 IPR003340 GO:0003677
Lal10g0797 584 ProSiteProfiles B3 DNA-binding domain profile. 236 332 IPR003340 GO:0003677
Lal10g0797 584 ProSiteProfiles B3 DNA-binding domain profile. 465 561 IPR003340 GO:0003677
Lal10g0797 584 CDD B3_DNA 24 108 IPR003340 GO:0003677
Lal10g0797 584 SUPERFAMILY DNA-binding pseudobarrel domain 458 559 IPR015300 -
Lal10g0797 584 SUPERFAMILY DNA-binding pseudobarrel domain 13 112 IPR015300 -
Lal10g0797 584 PANTHER B3 DOMAIN-CONTAINING 440 574 - -
Lal10g0797 584 PANTHER B3 DOMAIN-CONTAINING 8 439 - -
Lal10g0797 584 Pfam B3 DNA binding domain 236 327 IPR003340 GO:0003677
Lal10g0797 584 Pfam B3 DNA binding domain 24 109 IPR003340 GO:0003677
Lal10g0797 584 Pfam B3 DNA binding domain 465 552 IPR003340 GO:0003677
Lal10g0797 584 CDD B3_DNA 463 557 IPR003340 GO:0003677
Lal10g0797 584 SMART B3_2 236 332 IPR003340 GO:0003677
Lal10g0797 584 SMART B3_2 465 561 IPR003340 GO:0003677
Lal10g0797 584 SMART B3_2 19 110 IPR003340 GO:0003677
Lal10g0797 584 Gene3D - 11 112 IPR015300 -
Lal10g0797 584 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 440 574 - -
Lal10g0797 584 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 8 439 - -
Lal10g0797 584 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Lal10g0797 584 Gene3D - 216 331 IPR015300 -
Lal10g0797 584 Gene3D - 450 560 IPR015300 -
Lal10g0797 584 SUPERFAMILY DNA-binding pseudobarrel domain 229 330 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0797 Lal-Chr10 15696728 15702267 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0797 16 330 B3 DNA Binding Superfamily AT3G18990 23.699 1.10e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal10g0797 B3 1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0797 - - gmx:100814386 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0797 10 15696728 15702267 Lal10g0797 10 15696728 15702267 ECH