Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0796 ATGGATGAACAAAGCTGTGAAAAATGCATATCCTGGGCTGATGATATTTACTGGTCTCATTTTCAAGTCCTCCATTTTGCTCACTTTCTCTGCACTGATTTTGATCAACACCTTGCACTTCCCAAAACATTTTCGGATAACTTAAAGAAGAAGTTGCCAGAAAAAGCTGGCCTCAGAGGTCCTGGCGGAGTTGTGTGGAAAATAGGATTGACAACAAGAGATGATACCTTGTACTTCACGCATGGCTGGCAAGAATTTGTGAAAGATAACTCTTTGAAAGAGAATGATTTCCTCGTGTTTAAGTACAATGGCGGTCAATCACTGTTTGATGTTTTGATATTTGATGGGGAGAGCTTCTGTGAGAAGGCGGCTTCTTATTTTGTTCGAAAATGTGTGCATACTGAACATGTGGATGGATGTTCGAGCAAGAGAAAAGATACAGATAATTATGTGGAACAAGGTAATACCCCTTCTGATGCTGGGGTTGAGTGTGCTGCACATGAGAAATCCGTGCATGACAACGCAGTCGGAGTCCCGGCAGCTTTACCCTCGGGTACTCCTGTTAGTGAAAGGACTTTAAATGCTGGTGTTGAATCTGCTTCCCCCGAGCAATTTATGCATGCTAATGGAGACACGGTGGCAAAAGTCGTTCCCTTGAAAACTGCTGAAAAAGGGACCGGGGAGGTAGTTTCTGCGGTTAAGAATGCTTCGAGTAAGCGTAGAGGAAGACCTCCAAGAGTATCTAGACCTTCCCAGGAAGTAGTTGACTGGGTGTCTGATTCTGAAGCAGTTGCTCAAGGTGCGGAAAATATTGAATCATACACCTCAAATAGAAGGCCTGTCACAGAACATGAGATAAATAGTGCCCTCCTTTTGGCCCAGGCAGCATCTACCAACAACAGCTTGTTGATAGTTATGCGACCGACACATGTATATAAGAGATTCTACTTGGTAAGCAGTTGCATCCCGGATTTCATTTTCCGGCCAATACCAAATAATTGGATAATGCAACATCTCTCTCTGCGATCTCAAGATCTTATATTCCGTATTGGTACGACTGAATGGCGTGTCAAATACTGCTTCCATCGTAATCGTTATATCGGAGGACTTACTGTTGGCTGGAGAAATTTGACCCTGGATAATAACCTGGAAGAGTTTGATGTGTGTGTGTTTGAACCAGCAAGCAAAGTCAATGACACAATGATCATTGATATGAAAATTTTCAGAGTTGTTGATGATATTGCTCCTCTGACTATTGTTAAATCTCCTGGCAAAAAGGGAAGAAAAAGAGCAATCAATGAAATCCAAACATAG 1314 0.4239 MDEQSCEKCISWADDIYWSHFQVLHFAHFLCTDFDQHLALPKTFSDNLKKKLPEKAGLRGPGGVVWKIGLTTRDDTLYFTHGWQEFVKDNSLKENDFLVFKYNGGQSLFDVLIFDGESFCEKAASYFVRKCVHTEHVDGCSSKRKDTDNYVEQGNTPSDAGVECAAHEKSVHDNAVGVPAALPSGTPVSERTLNAGVESASPEQFMHANGDTVAKVVPLKTAEKGTGEVVSAVKNASSKRRGRPPRVSRPSQEVVDWVSDSEAVAQGAENIESYTSNRRPVTEHEINSALLLAQAASTNNSLLIVMRPTHVYKRFYLVSSCIPDFIFRPIPNNWIMQHLSLRSQDLIFRIGTTEWRVKYCFHRNRYIGGLTVGWRNLTLDNNLEEFDVCVFEPASKVNDTMIIDMKIFRVVDDIAPLTIVKSPGKKGRKRAINEIQT 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0796 437 CDD B3_DNA 34 115 IPR003340 GO:0003677
Lal10g0796 437 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 269 418 IPR044837 -
Lal10g0796 437 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 3 174 IPR044837 -
Lal10g0796 437 ProSiteProfiles B3 DNA-binding domain profile. 23 117 IPR003340 GO:0003677
Lal10g0796 437 SUPERFAMILY DNA-binding pseudobarrel domain 314 398 IPR015300 -
Lal10g0796 437 CDD B3_DNA 305 409 IPR003340 GO:0003677
Lal10g0796 437 Gene3D - 19 120 IPR015300 -
Lal10g0796 437 SUPERFAMILY DNA-binding pseudobarrel domain 22 115 IPR015300 -
Lal10g0796 437 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 269 418 - -
Lal10g0796 437 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 3 174 - -
Lal10g0796 437 Pfam B3 DNA binding domain 37 115 IPR003340 GO:0003677
Lal10g0796 437 Gene3D - 281 413 IPR015300 -
Lal10g0796 437 SMART B3_2 26 117 IPR003340 GO:0003677
Lal10g0796 437 SMART B3_2 312 411 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0796 Lal-Chr10 15690527 15694224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0796 3 409 REM Transcription Factor Family AT4G33280 31.807 1.56e-64 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal10g0796 B3 7.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0796 - - lang:109338042 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0612 8 4265027 4268307 Lal10g0796 10 15690527 15694224 LSH
Lal25g0568 25 4214450 4223360 Lal10g0796 10 15690527 15694224 LSH