Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0790 ATGGAATATATGTCAATAATTATGGCAAGTGGGTTCGGAGAATCAACAAGCAGGTCACCCCCGAGCCCTTCTTACTCCTGCAACAATAATAACAACAGCGATGCCGGCAATTTTGAATGCAACATTTGCTTTGAGTTAGCACAAGACCCTATAATTACTTTATGTGGCCATCTCTTCTGCTGGCCTTGTCTTTACAGTTGGCTTCACTTCCATTCAAAGTCACAAGAATGCCCTGTGTGCAAGGCTCTCGTCGAGGAGGAGAAGCTGGTTCCCTTATACGGGAGAGGAAAGACATCGACTGACCCAAGATCAAAATCTATTCCAGGTGTTAATATCCCCCATCGTCCTGCTGGTCAGAGGCCTGAAACTGCTCCTCCACCTGAACGTAATACTTTTCCTCAACCTGGCTTTGGATACACGGGCGGGTTAGGAGGGTTTGCACCCATGGCAACCGCTAGATTTGGGAATTTCACATTGGCTGCAGCAATTGGTGGTTTTCTTCCATCCATATTTAACTTTCACTTGCAGGGGTTTCATGATGGTCCCATGTTCGGTGGAGATGCTGGTTTTCCATATGGGTTTTCTAATTCATTTCATGGTGGTGGCCATTTTCGTAGACATGCTCCGCACAGAGGTCAAGGACAACAAGATTATTATCTGAAGAGGCTGCTAATGTTTATTATTTTCTGTGTCGTTGTTGCTTTGATTTGGCAATAG 717 0.4519 MEYMSIIMASGFGESTSRSPPSPSYSCNNNNNSDAGNFECNICFELAQDPIITLCGHLFCWPCLYSWLHFHSKSQECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPERNTFPQPGFGYTGGLGGFAPMATARFGNFTLAAAIGGFLPSIFNFHLQGFHDGPMFGGDAGFPYGFSNSFHGGGHFRRHAPHRGQGQQDYYLKRLLMFIIFCVVVALIWQ 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0790 238 CDD RING-HC_AtRMA_like 38 82 - -
Lal10g0790 238 Pfam Zinc finger, C3HC4 type (RING finger) 40 80 IPR018957 GO:0046872
Lal10g0790 238 PANTHER OS12G0636000 PROTEIN 9 238 - -
Lal10g0790 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 238 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lal10g0790 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 94 IPR013083 -
Lal10g0790 238 SUPERFAMILY RING/U-box 37 93 - -
Lal10g0790 238 MobiDBLite consensus disorder prediction 94 130 - -
Lal10g0790 238 ProSitePatterns Zinc finger RING-type signature. 55 64 IPR017907 -
Lal10g0790 238 SMART ring_2 40 80 IPR001841 -
Lal10g0790 238 ProSiteProfiles Zinc finger RING-type profile. 40 81 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0790 Lal-Chr10 15618444 15620604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0790 38 221 C3H Transcription Factor Family AT1G19310 62.963 5.76e-82 243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0790 10 15618444 15620604 Lal10g0790 10 15618444 15620604 ECH