Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0759 ATGGGTTTTGAACATGGAAATAAGAGCATTCTGAAGTGTCCTGAATCATCTGGTTTGAGCACAAATGTTTCAGAAATGGGTATTAGTTCTGTCTCCAAGGCTAACTCTCCTACCCCTTCAGATCATGTAACTAATCCATTTCTTACTTCTTCTGCTTGGGATCCACTTGTTTCACTGAGTCAGGCTCAAACTTTTGGAGGCTCTTCAATGGTTTCTCATAGTGACTTTGGCAGAAACTCATCTTACCCTCTTGGTTTGGAAAATCAAGGAATGAGTAGCACCTCTCACCTTGTTCAGTATATGTCTGAGTCAAATCTTGGGGACATGGTCTCCAAAGTTCCTTCCTTTGGTAGTGGAAACTTCTCAGAAATTGTTGGCACTTTTGGTCAACCTGGGTTTGGTGACATAGCTAACACTAACTCTGAGTATAGACCAAATTATAATATGAATAAGGATGCAATAATTGGTGAACAATCTCAGCTTGAGGATTCAGCTACTGAAGAGGGTGCAGCAGGATCTGGACCTAGTGGAAATAGAAGAAAGAGAAGTATTGATCATGATTCTTCTTTCAGTCCAAATAAGAATGCTATTAGTGATGTGCTGAAAGATTCCCCTGGGAAGAGCTCTGATGGTGCAAAAGAACATGAAAAGAAACAAAAAGTTGAGCAGGATAGTAGTGCAGATTTGCACCGTAAGCAACCGGTGAAGCAAGCTAAAGAGAATTCTCAAAGTGGAGAAGCTCCTAAAGACAATTTCATTCATGTGAGAGCTCGAAGAGGTCAAGCTACAAACAGCCATAGTCTTGCAGAAAGGGTAAGAAGAGAAAAAATTAGCGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCCGGGTGCAACAAGATAACCGGAAAAGCAGTAATGCTGGATGAGATTATAAACTATGTGCAATCACTGCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAATCCAGAACTGAATTTTGATGTAGAGCAGATCCTATCCAAGGATATTCTCCGCTCACGCATAGGAGAACACGGAATTGGTGGATATCGTCTTAGTATAAGTTCTTCTCACCCATTTCCCAATGCAAGTTTCCATGGAACCATGACTGGCATGCCTAGTACTTCAACACAATTTGATCTTTTGCCTCAGACTCTTTCGGATCACGATTTCCAAAGCTTCTATGGAATGGGATATGATTCCAGTACAACACGATAA 1230 0.4122 MGFEHGNKSILKCPESSGLSTNVSEMGISSVSKANSPTPSDHVTNPFLTSSAWDPLVSLSQAQTFGGSSMVSHSDFGRNSSYPLGLENQGMSSTSHLVQYMSESNLGDMVSKVPSFGSGNFSEIVGTFGQPGFGDIANTNSEYRPNYNMNKDAIIGEQSQLEDSATEEGAAGSGPSGNRRKRSIDHDSSFSPNKNAISDVLKDSPGKSSDGAKEHEKKQKVEQDSSADLHRKQPVKQAKENSQSGEAPKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVEQILSKDILRSRIGEHGIGGYRLSISSSHPFPNASFHGTMTGMPSTSTQFDLLPQTLSDHDFQSFYGMGYDSSTTR 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0759 409 CDD bHLH_AtBPE_like 251 336 - -
Lal10g0759 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 311 IPR011598 GO:0046983
Lal10g0759 409 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 7 407 IPR024097 GO:0006355
Lal10g0759 409 MobiDBLite consensus disorder prediction 206 237 - -
Lal10g0759 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 259 329 IPR036638 GO:0046983
Lal10g0759 409 MobiDBLite consensus disorder prediction 159 250 - -
Lal10g0759 409 Gene3D - 258 333 IPR036638 GO:0046983
Lal10g0759 409 Pfam Helix-loop-helix DNA-binding domain 264 312 IPR011598 GO:0046983
Lal10g0759 409 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 7 407 - -
Lal10g0759 409 SMART finulus 267 317 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0759 Lal-Chr10 15276079 15280704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0759 1 408 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 41.363 2.18e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal10g0759 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0759 - - gmx:100794464 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0695 8 4924096 4928142 Lal10g0759 10 15276079 15280704 LSH
Lal25g0614 25 4653835 4657318 Lal10g0759 10 15276079 15280704 LSH