Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0753 ATGGGTTTTAATGATATCGCTAACACGGGGCTTCAATTTGGTCTTGGTCTTAGTCTTGGCCTCCATGATCATCAACACAAGCAAAGAGATCAAAGCCACAAAAAAAGAAAGGATGTTTCATCAAAATGTAACAAGGCATACCCATCTCTAACATTAGGACCAAGTGATGAAGCAAATAACCAACCAAATTCAAAGACTGAAATCTCTTCATTAGTTTCCAACTCTTCAAGTATCAAGAGGGAGAGAGACAATTTTTTAGGTCAAAACTTTGAGGTAGAGGTAGAAAAGGTTACATCAAATTCAAAGGGAGAGGATTTTGAAGATGAAGTATGTAACACAAGGAAGAAACTTAGGCTCACAAAAGAACAATCCACAGTGTTAGAGGAAAACTTCATAGAGCATTCTACTCTCAATCCGAAGCAAAAGCAAGAGCTAGCAATGAAGCTAAATTTGAGGACGAGACAAATAGAGGTGTGGTTTCAAAATAGAAGAGCCAGGACAAAACTAAAGCAAACAGAAACTGATTGTGAGTTACTGAAGAAGTACTATGAGACTCTAACAGAAGAGAACAAGAGGCTGCAAAGGGAGCTACAAGAACTTAAATCAATGGAAACTTCACCAAAACCCTTTCCTATGCAGATTCCATAA 648 0.3781 MGFNDIANTGLQFGLGLSLGLHDHQHKQRDQSHKKRKDVSSKCNKAYPSLTLGPSDEANNQPNSKTEISSLVSNSSSIKRERDNFLGQNFEVEVEKVTSNSKGEDFEDEVCNTRKKLRLTKEQSTVLEENFIEHSTLNPKQKQELAMKLNLRTRQIEVWFQNRRARTKLKQTETDCELLKKYYETLTEENKRLQRELQELKSMETSPKPFPMQIP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0753 215 Coils Coil 169 206 - -
Lal10g0753 215 MobiDBLite consensus disorder prediction 44 75 - -
Lal10g0753 215 SMART HOX_1 112 174 IPR001356 GO:0003677
Lal10g0753 215 CDD homeodomain 114 171 IPR001356 GO:0003677
Lal10g0753 215 Gene3D - 118 168 - -
Lal10g0753 215 PANTHER - 17 215 - -
Lal10g0753 215 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981|GO:0006355
Lal10g0753 215 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677
Lal10g0753 215 SUPERFAMILY Homeodomain-like 110 171 IPR009057 -
Lal10g0753 215 MobiDBLite consensus disorder prediction 24 75 - -
Lal10g0753 215 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 17 215 - -
Lal10g0753 215 SMART halz 170 213 IPR003106 GO:0006355|GO:0043565
Lal10g0753 215 Pfam Homeodomain 114 168 IPR001356 GO:0003677
Lal10g0753 215 Pfam Homeobox associated leucine zipper 170 204 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0753 Lal-Chr10 15217077 15219491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0753 1 215 Homeobox Transcription Factor Family AT4G37790 49.565 1.71e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal10g0753 Homeodomain 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0753 K09338 - gmx:100797650 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0753 10 15217077 15219491 Lal10g0753 10 15217077 15219491 ECH