Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0727 ATGTGGTGCAGTGTTGCAGGAACAACATTGTTAGAGATAAAGAAGTCATTCAGGGATGTGGATAATGTTCTGTATGATTGGACAAACTCACCATCATCAGATTATTGTGTGTGGAGAGGGATCTCATGTGATAATGTTACCTTTGATGTGGTTGCACTCAATCTTTCAGGTTTGAATCTTGATGGCGAAATTTCGCCTGCAATAGGGAGCCTAAAGAGCTTGGTTTCTATTGACCTTAGAGAAAACCGTTTATCGGGCCAGATACCCGATGAGATTGGTGATTGTTCTTCCCTAAAAAGCTTGGACCTATCATTTAATCAGATTAGAGGGGATATACCATTTTCAATTTCTAAGTTGAAGCAGCTAGAAAATCTGATTTTGAGAAATAATCAGTTAATTGGACCAATTCCTTCAACTTTGTCTCAGATTCCTAACTTGAAGATTATAGACCTGGCACAAAATAACATCAGTGGTGAAATTCCAAGGCTTATATACTGGAATGAAGTTTTGCAGTATCTTGGCTTGCGAGGGAACAATTTGGTAGGTTCACTATCACCAGACATGTGCCAGTTAACTGGATTGTGGTATTTTGATGTGAGAAACAATAGCTTGACCGGAAGTATTCCCGAAAACATAGGCAACTGTACTGGCTTCCAGGTCTTGGATTTATCCTACAACCAGCTAACTGGAGAGATACCATACAATATTGGATTTTTGCAAGTAGCAACCTTGTCGCTGCAAGGCAATAAACTCTCTGGGCATATTCCGTGGGTGATCGGTCTCATGCAAGCACTTGCTGTCTTAGACTTGAGTTGTAATATGTTAAGTGGACCAATCCCTTCCATCTTGGGAAATTTGTCCTACACAGAAAAAGTGTATTTGCATGGGAACAAGCTGACTGGCTTCATTCCCCCGGAGCTCGGAAATATGTCAAAGCTTCACTACTTGGAACTGAACAATAACCATTTAAGTGGACATATCCCACCCGAACTTGGAAAGCTTACCGATCTGTTTGACTTAAATGTTGCTAACAACAACCTTGAGGGGCCAATTCCTGATAACCTTAGCTTATGTAAAAATCTTAACAGCCTCAATGTACACGGGAACAAGTTGAACGGAACAATTCCCCCGGCTTTGCAGAGCTTGGAGAGTATGACCTATTTGAATCTATCATCGAACAATCTTCAGGGACCCATTCCAATTGAACTGTCACGGATCGGTAATTTGGATACATTGGACATCTCAAATAATAATATAGTTGGCTCCATTCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGTTGAATCTAAGCGGAAATCATATAACAGGATTTATTCCAGCTGAATTTGGTAATCTTAGAAGTGTTATGGATATTGATCTTTCAAATAATCAACTCTCCGGCTTGATACCTGAGGAACTTAGTCAGCTCCAAAACATGATATTCTTGAGGCTTGAGAACAACAAATTAACCGGGGATGTGACATCACTTGTAGATTGCCTTAGCCTTTCTCTGCTTAACGTGTCCTATAACAAACTAGTCGGTGTTATTCCCACGAGAAACAACTTCACTAGGTTCTCCTTTGACAGTTTCATTGGAAACCCTGGTCTTTGTGGCAATTGGCCGAATTTGCCCTGTCATAGTTCTCAACCTACAGAGCGAGTTACATTATCTAAGGCAGCTATACTCGGAATTACTCTCGGTGCCCTTGTAATTCTTCTTATGATATTGCTGGCAGCTTGCCGACCACACAATCCATCTTCTTTTCCTGATGGATCACTTGAAAAACCAGTTATTTATTCACCTCCGAAGCTTGTGATTCTTCATATGAATATGGCGCTTCATGTGTACGATGATATCATGAGGATGACTGAAAACCTGAGTGAGAAGTATATAATAGGATATGGTGCATCTAGTACAGTTTATAAATGTGTTCTTAAGAACTGCAAGCCGGTTGCTATCAAGAGGCTCTATTCTCACTACCCACAATGCTTGAAAGAATTTGAGACTGAACTTGAGACGGTTGGAAGCATTAAGCATCGGAATCTGGTCAGTCTCCAAGGATACTCTCTGTCCCCATATGGGCATCTTCTCTTTTACGATTACATGGAGAACGGTAGTCTGTGGGATCTTCTTCATGCAAGCAATGCTGTAATGGAGACAGTTGATCCTGACATTACTTCCACTTGTAAGGACATGGGAGCAGTGAAGAAGGTTTATCAGCTTGCTCTATTATGCACAAAGAGGCAACCGGCCGATAGGCCCACGATGCATGAAGTGACAAGAGTGTTGGGCAGCCTAATTCCATGTACCACCCCACCGCCGAAACAACCGGCTCCACTACTACCTGCTTCACACCAATCTACCAAAATACCATGCTATAAGGATGAATATGCAAATCTCAAAACTCCACACTTGGTGAATGGCCCTTCTATGAGTACCTCTGATGCTCAACTCTTCCTCAAGTTTGGAGAGGTAATCTCTCAGAACAGTGAGTGA 2502 0.4165 MWCSVAGTTLLEIKKSFRDVDNVLYDWTNSPSSDYCVWRGISCDNVTFDVVALNLSGLNLDGEISPAIGSLKSLVSIDLRENRLSGQIPDEIGDCSSLKSLDLSFNQIRGDIPFSISKLKQLENLILRNNQLIGPIPSTLSQIPNLKIIDLAQNNISGEIPRLIYWNEVLQYLGLRGNNLVGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTGFQVLDLSYNQLTGEIPYNIGFLQVATLSLQGNKLSGHIPWVIGLMQALAVLDLSCNMLSGPIPSILGNLSYTEKVYLHGNKLTGFIPPELGNMSKLHYLELNNNHLSGHIPPELGKLTDLFDLNVANNNLEGPIPDNLSLCKNLNSLNVHGNKLNGTIPPALQSLESMTYLNLSSNNLQGPIPIELSRIGNLDTLDISNNNIVGSIPSSLGDLEHLLKLNLSGNHITGFIPAEFGNLRSVMDIDLSNNQLSGLIPEELSQLQNMIFLRLENNKLTGDVTSLVDCLSLSLLNVSYNKLVGVIPTRNNFTRFSFDSFIGNPGLCGNWPNLPCHSSQPTERVTLSKAAILGITLGALVILLMILLAACRPHNPSSFPDGSLEKPVIYSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHASNAVMETVDPDITSTCKDMGAVKKVYQLALLCTKRQPADRPTMHEVTRVLGSLIPCTTPPPKQPAPLLPASHQSTKIPCYKDEYANLKTPHLVNGPSMSTSDAQLFLKFGEVISQNSE 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0727 833 ProSitePatterns Protein kinases ATP-binding region signature. 634 656 IPR017441 GO:0005524
Lal10g0727 833 Gene3D Phosphorylase Kinase; domain 1 603 698 - -
Lal10g0727 833 Pfam Leucine rich repeat N-terminal domain 8 44 IPR013210 -
Lal10g0727 833 Gene3D Ribonuclease Inhibitor 6 166 IPR032675 -
Lal10g0727 833 Pfam Leucine rich repeat 408 467 IPR001611 GO:0005515
Lal10g0727 833 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Lal10g0727 833 Gene3D Ribonuclease Inhibitor 327 422 IPR032675 -
Lal10g0727 833 Gene3D Ribonuclease Inhibitor 241 326 IPR032675 -
Lal10g0727 833 Gene3D Ribonuclease Inhibitor 423 549 IPR032675 -
Lal10g0727 833 SUPERFAMILY L domain-like 30 299 - -
Lal10g0727 833 SUPERFAMILY Protein kinase-like (PK-like) 601 718 IPR011009 -
Lal10g0727 833 Gene3D Ribonuclease Inhibitor 167 240 IPR032675 -
Lal10g0727 833 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 715 - -
Lal10g0727 833 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 715 819 - -
Lal10g0727 833 ProSiteProfiles Protein kinase domain profile. 628 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g0727 833 Pfam Protein kinase domain 631 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal10g0727 833 SUPERFAMILY L domain-like 234 539 - -
Lal10g0727 833 Gene3D Transferase(Phosphotransferase) domain 1 699 777 - -
Lal10g0727 833 SMART LRR_typ_2 119 143 IPR003591 -
Lal10g0727 833 SMART LRR_typ_2 191 215 IPR003591 -
Lal10g0727 833 SMART LRR_typ_2 382 406 IPR003591 -
Lal10g0727 833 SMART LRR_typ_2 454 477 IPR003591 -
Lal10g0727 833 SMART LRR_typ_2 310 334 IPR003591 -
Lal10g0727 833 SMART LRR_typ_2 71 95 IPR003591 -
Lal10g0727 833 SMART LRR_typ_2 430 453 IPR003591 -
Lal10g0727 833 ProSiteProfiles Leucine-rich repeat profile. 97 120 IPR001611 GO:0005515
Lal10g0727 833 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 6 715 - -
Lal10g0727 833 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 715 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0727 Lal-Chr10 15020423 15028146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0727 717 769 Receptor kinase-like Gene Family AT5G07180 62.264 1.75e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Lal10g0727 Pkinase 2.3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0727 K20718 - cpap:110809270 1372.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0727 10 15020423 15028146 Lal10g0727 10 15020423 15028146 ECH
Lal8g0829 8 5969435 5978246 Lal10g0727 10 15020423 15028146 LSH