Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0700 ATGGCAGAAGCTAAGAAGAGTGCCAAATTGAACAAGGGTGTTGTGGATGACACTCACAATAAGGTTAGTGAAAGCCAAGATTGGGAGATTGAAAATGAAAAAAGAAAAGCTATGAATTCAAGCTTTCAAAGACATCAAGAGAAGCCATTTTTTAAGGAAGCTTCATCAAATGAAAATAATGTTAGGCTTTTCAAGAAGATTTGTAGCACTGAACATCAAACTTCAAACCAATCCTCTGTTGCATCATCCTCTTCAAGAATTGTGTTCCCTTTTGCTTTTGATGCTTCACAACATCATAATCCAATGCGAATGCAATTTCCACACCAATTTGGAACAACAAATTCTCCTTTGATTCGTCCACAATTTCAAGCAACAACCACACAAAACATGATATCTTTTGAGTCCCAACAACAACATAAGATTGTGTATCCACCAATCATAGCAAGAGAATCTGCATTGCTTCTACATCAACAACAACAAATTCTTCAGAATTGGAGTGATGCAATGAACCACAACATGTTTGGTCCGGATGGAAGGCCGTTGTTTAGGCCTATAACGCAGCCGATAAACACTACCAAGCTCTATAGGGGTGTGAGGCAACGCCATTGGGGAAAATGGGTAGCCGAGATTCGCTTACCTCGAAATAGGACTCGCCTTTGGCTAGGCACATTTGACACTGCAGAAGATGCTGCTATGGCCTACGACCGTGAGGCTTTTAAACTAAGAGGAGATAATGCTAGGCTCAATTTCCCTGAACATTTTATTAACAAGGAAAAAGAAGCCGACGCTTATTCTAAAACTCCAACTCCAACTTCATATGCTTCCTCTACTTGTTCAACAAGCAACACAACATTGCTTCCTGAACAAGTTGTTCCAGCAGGCCTTAATGTGCAGCCACCAATGCCAACGGAAGATGCTTCGGAGAATAATTCAGGGATCGAATCGAGTGATGCTAATTTGAATGATGAGGTTGATGCAGCTGCTGCAGCAAGTGGTGAAGTAGGGGAAGGTGTGTCACAGTGTCAGGAATTGGATTGGGGAGAAATGTCAGCATGGTTCAATGCTATTCCTGCAGGTTGGGGTCCAAGTAGTCATGTTTGGGATGATTATGACACTACCAATAGTTTTCTTTTGCAGTCACAGAATCCATTTGTTAATCCAAATCAACAAGAATTTAACTTTGATGATGATGCTCATACACAAGAAGATAACTCAAAATAA 1221 0.4062 MAEAKKSAKLNKGVVDDTHNKVSESQDWEIENEKRKAMNSSFQRHQEKPFFKEASSNENNVRLFKKICSTEHQTSNQSSVASSSSRIVFPFAFDASQHHNPMRMQFPHQFGTTNSPLIRPQFQATTTQNMISFESQQQHKIVYPPIIARESALLLHQQQQILQNWSDAMNHNMFGPDGRPLFRPITQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGDNARLNFPEHFINKEKEADAYSKTPTPTSYASSTCSTSNTTLLPEQVVPAGLNVQPPMPTEDASENNSGIESSDANLNDEVDAAAAASGEVGEGVSQCQELDWGEMSAWFNAIPAGWGPSSHVWDDYDTTNSFLLQSQNPFVNPNQQEFNFDDDAHTQEDNSK 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0700 406 Gene3D AP2/ERF domain 194 253 IPR036955 GO:0003700|GO:0006355
Lal10g0700 406 CDD AP2 193 253 IPR001471 GO:0003700|GO:0006355
Lal10g0700 406 SUPERFAMILY DNA-binding domain 194 252 IPR016177 GO:0003677
Lal10g0700 406 SMART rav1_2 194 257 IPR001471 GO:0003700|GO:0006355
Lal10g0700 406 MobiDBLite consensus disorder prediction 1 43 - -
Lal10g0700 406 MobiDBLite consensus disorder prediction 297 317 - -
Lal10g0700 406 ProSiteProfiles AP2/ERF domain profile. 194 251 IPR001471 GO:0003700|GO:0006355
Lal10g0700 406 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 1 394 - -
Lal10g0700 406 Pfam AP2 domain 195 243 IPR001471 GO:0003700|GO:0006355
Lal10g0700 406 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 394 - -
Lal10g0700 406 MobiDBLite consensus disorder prediction 265 280 - -
Lal10g0700 406 PRINTS Ethylene responsive element binding protein signature 195 206 IPR001471 GO:0003700|GO:0006355
Lal10g0700 406 PRINTS Ethylene responsive element binding protein signature 217 233 IPR001471 GO:0003700|GO:0006355
Lal10g0700 406 MobiDBLite consensus disorder prediction 302 317 - -
Lal10g0700 406 MobiDBLite consensus disorder prediction 261 280 - -
Lal10g0700 406 MobiDBLite consensus disorder prediction 386 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0700 Lal-Chr10 14782822 14784042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0700 180 370 AP2-EREBP Transcription Factor Family AT2G20880 51.832 8.46e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal10g0700 AP2 4.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0700 - - lang:109337172 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0700 10 14782822 14784042 Lal10g0700 10 14782822 14784042 ECH
Lal10g0700 10 14782822 14784042 Lal8g0793 8 5706049 5709892 LSH