Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0697 ATGGACTTAGATCAGTATTTTGAGGAGGCTATGCCCCAAAATTATTACTTCGAAGATAAATTATCGCCTGAGATGTGGGAATCTGCCGACGATACCATTGCAGATTCTGATAGAAATGGTGGCTTTGACTGCAACATCTGTCTGGAGAGCGTGCAAGATCCGGTAGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATTTCTATAGTTTCACATCTCAAAATGAAGAGAATGAGAAAACAGAATGTCCGGTATGCAAATCAGAAATTTCCGAATCCTCACTTGTTCCACTATATGCCCACGGCCAAACCACATCACATTCTACAAGCAAGACTCGTCGAGCAGGGATCATCATACCGCGAAGACCCCATGGTCCTTCATGGATGGCTGGGTCATCAAGATCCCGACCGGCTTCACAAGTTTACGATCGTCATTATCGTAACCATCCGGAAGAGTTCAACTCCTTTCCAGGCAGCTACACCTCACCAATGTTCGACACAGGTACCCCGCTCACAAACACATTCGATACAACATATGGAGTCTTCGGTGAGATGATCTATTCAAGGGTCTTCGGACACCAAGTGACAAACACATACACTAATTCATACAATCTCTCTCTGGAGAGTAATCCAAGGATCAGAAGGCAATTAGTGGAACTTGATAAGTCACTCAGTAGAATCTGTGTTTTCCTCCTTTGTTGCATGGTTTTATGTCTTCTATTATTCTGA 747 0.4378 MDLDQYFEEAMPQNYYFEDKLSPEMWESADDTIADSDRNGGFDCNICLESVQDPVVTLCGHLYCWPCIYKWLNFYSFTSQNEENEKTECPVCKSEISESSLVPLYAHGQTTSHSTSKTRRAGIIIPRRPHGPSWMAGSSRSRPASQVYDRHYRNHPEEFNSFPGSYTSPMFDTGTPLTNTFDTTYGVFGEMIYSRVFGHQVTNTYTNSYNLSLESNPRIRRQLVELDKSLSRICVFLLCCMVLCLLLF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0697 248 Pfam Zinc finger, C3HC4 type (RING finger) 44 92 IPR018957 GO:0046872
Lal10g0697 248 ProSitePatterns Zinc finger RING-type signature. 59 68 IPR017907 -
Lal10g0697 248 ProSiteProfiles Zinc finger RING-type profile. 44 93 IPR001841 -
Lal10g0697 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 248 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lal10g0697 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 248 - -
Lal10g0697 248 SMART ring_2 44 92 IPR001841 -
Lal10g0697 248 SUPERFAMILY RING/U-box 40 108 - -
Lal10g0697 248 CDD RING-HC_AtRMA_like 42 94 - -
Lal10g0697 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 106 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0697 Lal-Chr10 14763955 14764701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0697 24 248 C3H Transcription Factor Family AT4G28270 36.522 1.13e-42 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0697 K10666 - gmx:100785491 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0697 10 14763955 14764701 Lal10g0697 10 14763955 14764701 ECH