Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0686 ATGCCTTCCCAGAAACGTTCTTTCTCTGACTCTCTCCACGATGCAGACACTTCTTCACAGTTCCCCCACCATGTCAAACAACAACAACAACCTAAGCAGCACGAAGATGAAGATGAGGGAAACGATGAGCACGAGGAAGAGGATGAGGAAGAAGAAGAGCAAGAGGGTGATGCAGAAGAAGAAGAACAAAACGATGATGAAGATGAAGAAGAAGAAGGTCAACACCAGAACAATAACAAGGATGAAAAACCACAGGATTCTGACGAAACTACATCTTCTGGCTCTGAAGATAAATCGGAGTTTGTGTATGTAGAACTTCAGGAAGTTCGTAAAGATGTCCAGTGTCCAATTTGCCTTGGTATTATCAAGAAAACAAGAACTGTTATGGAATGCTTGCATCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTAGGGAACAATGAATGCCCTGCTTGCCGCACACATTGTGCTAGTCGTCGTTCTTTGAGAGATGATCCGAACTACGATGCACTTATTGCTGCTTTATATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGCGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTAGTTCAACGACAATCTGAAGCACTGGGAAAGAAACGTAAAGATACACCAGGTGCATCTGTGACAAGATCACAGCGTAATCAACGAAATGTTCATTCTAGGAGACAGAACCAAGTGATTGATAATCATGGGTCTGAAGATAATGAGGAGGAGAATGACAATAATGAAAAGGACTCATCTTCTGCCGATGAGCGGTGTGCAGAACCCAGGCAGAGAAAGCGAAAGAGATGGACCAGAGTTCGCCCCTCTCAGCCCTCATCATCAAGGGCAAGTCCTGATGGTGGAAGCATAGAAAGTGATATGGATATAAGTAGAGAAAACCAAGGAACTTCAAGGCTGGTGACAAGACCTCGAAAGCTTACTTGGGGAGGGGGTGGTTTTAGAAGTCACACACGATATGGCAGTGGTGGTGCTAGTAATAGCAAAATTTCCCGCAGTGGTCGAATGTCTAAGCTGGCTGATCATCTCCGCAACTTGGATGAGAATGCTGATGAGTTCGAAATCCATCTCATGCTTGTTTCCGTGGACAAACAAAGTACACCAATTTTGCAGCAGCCACACCTTTGCTGTCGACCAACTACATCTGTCAAGCACCTTCGTGAATATGTTGCTTGTCAAACACCATTGGCAGTCGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCGACAGTACAAAGTGTGACAAGGCAACCGATGATACTTCAGCCTTGATATGTGATAAGCTAACAACGCTCGTTATCGATCCATGCAAAGACGAGCTGGAAATTCTGCAAGAACATGAATCTTTTGCTGACATTACATCCAAATGCATATCTAAGATGGGGCATTTGATTCTGGCATACAGGCGCAAGGAAACACTATAA 1488 0.4388 MPSQKRSFSDSLHDADTSSQFPHHVKQQQQPKQHEDEDEGNDEHEEEDEEEEEQEGDAEEEEQNDDEDEEEEGQHQNNNKDEKPQDSDETTSSGSEDKSEFVYVELQEVRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALGKKRKDTPGASVTRSQRNQRNVHSRRQNQVIDNHGSEDNEEENDNNEKDSSSADERCAEPRQRKRKRWTRVRPSQPSSSRASPDGGSIESDMDISRENQGTSRLVTRPRKLTWGGGGFRSHTRYGSGGASNSKISRSGRMSKLADHLRNLDENADEFEIHLMLVSVDKQSTPILQQPHLCCRPTTSVKHLREYVACQTPLAVEEVEILAVKGCDSTKCDKATDDTSALICDKLTTLVIDPCKDELEILQEHESFADITSKCISKMGHLILAYRRKETL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0686 495 MobiDBLite consensus disorder prediction 211 354 - -
Lal10g0686 495 MobiDBLite consensus disorder prediction 1 99 - -
Lal10g0686 495 Pfam Zinc finger, C3HC4 type (RING finger) 114 154 - -
Lal10g0686 495 MobiDBLite consensus disorder prediction 228 246 - -
Lal10g0686 495 PANTHER OS11G0578200 PROTEIN 1 493 IPR044592 -
Lal10g0686 495 ProSitePatterns Zinc finger RING-type signature. 131 140 IPR017907 -
Lal10g0686 495 CDD RING-HC_RING1_like 115 155 - -
Lal10g0686 495 Coils Coil 181 212 - -
Lal10g0686 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 185 IPR013083 -
Lal10g0686 495 MobiDBLite consensus disorder prediction 39 72 - -
Lal10g0686 495 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 493 - -
Lal10g0686 495 Coils Coil 34 71 - -
Lal10g0686 495 ProSiteProfiles Zinc finger RING-type profile. 115 155 IPR001841 -
Lal10g0686 495 SMART ring_2 115 154 IPR001841 -
Lal10g0686 495 MobiDBLite consensus disorder prediction 309 323 - -
Lal10g0686 495 MobiDBLite consensus disorder prediction 73 99 - -
Lal10g0686 495 SUPERFAMILY RING/U-box 103 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0686 Lal-Chr10 14631595 14638016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0686 107 178 C3H Transcription Factor Family AT3G23060 36.000 2.76e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0686 K10695 - gmx:100776547 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0686 10 14631595 14638016 Lal10g0686 10 14631595 14638016 ECH
Lal10g0686 10 14631595 14638016 Lal8g0770 8 5520788 5526936 LSH