Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0679 ATGGCTTCGTTATTCAAGGATCTGTCGAAGCTTTCAGCATATAGAGATAGAAGATTCCCGGGAAATCAAGAGGAATTTGAATACGCGCTTCTGACATCAACTACTGTTTATGTTGGGAACATGTCGTTTTACACAACAGAGGAACAAGTTTATGAGCTGTTTTCCCGAACTGGAGAAATTAAGAAGATTATTATGGGTTTGGATAAGAACACAAAAACACCATGTGGTTTCTGTTTCATTTTGTATTACTCGCGTGAAGATACTGAGGATGCTTGCAAATACATAAGTGGGACGATACTGGATGACCGCCCTATTCGTGTTGATTTTGACTGGGGATTCCAAGAAGGCAGACAATGGGGTCGTGGTCGTAGTGGTGGCCAGGTTCGTGATGAATATCGCACTGATTATGATCCTGATATCCTTTTAATGGTTTATCATAATTATCTAGGTGGATACGGAAAGTTGGTTCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGTGCTGGTTCTTTGGACTCTTTTCCACCAGTTATTCCTAATTCCTATGGTAGACAAGGTGGAGGCAATGGCCATGGTGGTTCATATCGGCGTGGTAGAGACTACCATAGGAAGAGACGCAGAGATGATGACCGCCGCCACACACAAGAGTCCTCAAAAAGAACATCAGATCATGATTCTCGGAGGAACTCTGACCATGAGTCTAGACCGGAAAAAAATCCACGGTTTCGAGAGAGAGGTGACTCTGACGATGATGAGGAAGATGATAGAAAACGACAAGCTTAA 792 0.4268 MASLFKDLSKLSAYRDRRFPGNQEEFEYALLTSTTVYVGNMSFYTTEEQVYELFSRTGEIKKIIMGLDKNTKTPCGFCFILYYSREDTEDACKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPDILLMVYHNYLGGYGKLVQKELEVQRQLVDYGAGSLDSFPPVIPNSYGRQGGGNGHGGSYRRGRDYHRKRRRDDDRRHTQESSKRTSDHDSRRNSDHESRPEKNPRFRERGDSDDDEEDDRKRQA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0679 263 CDD RRM_NCBP2 36 113 IPR034148 -
Lal10g0679 263 MobiDBLite consensus disorder prediction 172 263 - -
Lal10g0679 263 Gene3D - 6 143 IPR012677 -
Lal10g0679 263 MobiDBLite consensus disorder prediction 206 263 - -
Lal10g0679 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Lal10g0679 263 SMART rrm1_1 35 108 IPR000504 GO:0003723
Lal10g0679 263 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 223 - -
Lal10g0679 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Lal10g0679 263 SUPERFAMILY RNA-binding domain, RBD 23 137 IPR035979 GO:0003676
Lal10g0679 263 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 223 IPR027157 GO:0000339|GO:0005846|GO:0045292
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0679 Lal-Chr10 14559004 14564174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0679 33 162 Eukaryotic Initiation Factors Gene Family AT1G49760 21.538 3.01e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0679 K12883 - gmx:100776217 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0679 10 14559004 14564174 Lal10g0679 10 14559004 14564174 ECH
Lal10g0679 10 14559004 14564174 Lal8g0764 8 5474232 5478634 LSH