Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal10g0672 | ATGGTTACCTTATCAATGGTCTTTGTTTTGGTCTTTGCTCTTTACCTCTACGCTAGGGTTTTTCTACGACGCCAAGCGCGCCGTAGAACTGCCATTCACCACCTTAGTCTCAACATGGCACATGCTCATGGCCAAGCTATTGAACCACACAACAAAGGACTCGACCCTTTACTCATACAAGCTCTTCCCATGTTCATCTTTAAGAGAAAGGGACCTCATCAACAACAAAGAGAAGATCATAATGGTGATGAATGTGCCGTGTGCTTGAGTGCTCTAGAGGATGAAGAAATGGTGAGATTGTTACCAAATTGTAAGCACAATTTCCACGTTGGTTGCATTGATACATGGTTGGCTTCACATTCCACGTGTCCAATTTGTAGAACCGAGGCTGAACCATGGCTCGTACCACAGCCACGTGAGGGTCCTAATGGCTTGATTCTTCCTGGTACACTTTCGGCTAAACTGTTGGTTGAACCCATTGAAGGTACATCAAATGGTACTACTAATGGTGGGTCACCTAAAATCAATGGTTCAAGTTCAAGATTGAGCTCGTTTCGAAGGATTCTTAGTAAAGAGGGATCATTAAAGAGAATTCAACCTTCTAGCAATGGTGATGATATTGACCAAGATTTAGAGAGGCAGTGA | 645 | 0.4341 | MVTLSMVFVLVFALYLYARVFLRRQARRRTAIHHLSLNMAHAHGQAIEPHNKGLDPLLIQALPMFIFKRKGPHQQQREDHNGDECAVCLSALEDEEMVRLLPNCKHNFHVGCIDTWLASHSTCPICRTEAEPWLVPQPREGPNGLILPGTLSAKLLVEPIEGTSNGTTNGGSPKINGSSSRLSSFRRILSKEGSLKRIQPSSNGDDIDQDLERQ | 214 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal10g0672 | 214 | SMART | ring_2 | 85 | 126 | IPR001841 | - | |
Lal10g0672 | 214 | PANTHER | RING-H2 FINGER PROTEIN ATL40-LIKE | 4 | 214 | - | - | |
Lal10g0672 | 214 | SUPERFAMILY | RING/U-box | 75 | 135 | - | - | |
Lal10g0672 | 214 | Pfam | Ring finger domain | 83 | 127 | IPR001841 | - | |
Lal10g0672 | 214 | ProSiteProfiles | Zinc finger RING-type profile. | 85 | 127 | IPR001841 | - | |
Lal10g0672 | 214 | CDD | RING-H2_PA-TM-RING | 84 | 127 | - | - | |
Lal10g0672 | 214 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 132 | IPR013083 | - | |
Lal10g0672 | 214 | MobiDBLite | consensus disorder prediction | 161 | 214 | - | - | |
Lal10g0672 | 214 | MobiDBLite | consensus disorder prediction | 161 | 187 | - | - | |
Lal10g0672 | 214 | PANTHER | RING FINGER DOMAIN-CONTAINING | 4 | 214 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal10g0672 | Lal-Chr10 | 14525305 | 14525949 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal10g0672 | 15 | 214 | C3H Transcription Factor Family | AT2G42350 | 43.842 | 4.39e-45 | 147 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal10g0672 | K19038 | - | gmx:100780265 | 236.884 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal10g0672 | 10 | 14525305 | 14525949 | Lal10g0672 | 10 | 14525305 | 14525949 | ECH | |
Lal10g0672 | 10 | 14525305 | 14525949 | Lal8g0750 | 8 | 5387359 | 5388078 | LSH |