Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0672 ATGGTTACCTTATCAATGGTCTTTGTTTTGGTCTTTGCTCTTTACCTCTACGCTAGGGTTTTTCTACGACGCCAAGCGCGCCGTAGAACTGCCATTCACCACCTTAGTCTCAACATGGCACATGCTCATGGCCAAGCTATTGAACCACACAACAAAGGACTCGACCCTTTACTCATACAAGCTCTTCCCATGTTCATCTTTAAGAGAAAGGGACCTCATCAACAACAAAGAGAAGATCATAATGGTGATGAATGTGCCGTGTGCTTGAGTGCTCTAGAGGATGAAGAAATGGTGAGATTGTTACCAAATTGTAAGCACAATTTCCACGTTGGTTGCATTGATACATGGTTGGCTTCACATTCCACGTGTCCAATTTGTAGAACCGAGGCTGAACCATGGCTCGTACCACAGCCACGTGAGGGTCCTAATGGCTTGATTCTTCCTGGTACACTTTCGGCTAAACTGTTGGTTGAACCCATTGAAGGTACATCAAATGGTACTACTAATGGTGGGTCACCTAAAATCAATGGTTCAAGTTCAAGATTGAGCTCGTTTCGAAGGATTCTTAGTAAAGAGGGATCATTAAAGAGAATTCAACCTTCTAGCAATGGTGATGATATTGACCAAGATTTAGAGAGGCAGTGA 645 0.4341 MVTLSMVFVLVFALYLYARVFLRRQARRRTAIHHLSLNMAHAHGQAIEPHNKGLDPLLIQALPMFIFKRKGPHQQQREDHNGDECAVCLSALEDEEMVRLLPNCKHNFHVGCIDTWLASHSTCPICRTEAEPWLVPQPREGPNGLILPGTLSAKLLVEPIEGTSNGTTNGGSPKINGSSSRLSSFRRILSKEGSLKRIQPSSNGDDIDQDLERQ 214
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0672 214 SMART ring_2 85 126 IPR001841 -
Lal10g0672 214 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 4 214 - -
Lal10g0672 214 SUPERFAMILY RING/U-box 75 135 - -
Lal10g0672 214 Pfam Ring finger domain 83 127 IPR001841 -
Lal10g0672 214 ProSiteProfiles Zinc finger RING-type profile. 85 127 IPR001841 -
Lal10g0672 214 CDD RING-H2_PA-TM-RING 84 127 - -
Lal10g0672 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 132 IPR013083 -
Lal10g0672 214 MobiDBLite consensus disorder prediction 161 214 - -
Lal10g0672 214 MobiDBLite consensus disorder prediction 161 187 - -
Lal10g0672 214 PANTHER RING FINGER DOMAIN-CONTAINING 4 214 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal10g0672 Lal-Chr10 14525305 14525949 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0672 15 214 C3H Transcription Factor Family AT2G42350 43.842 4.39e-45 147
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0672 K19038 - gmx:100780265 236.884
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0672 10 14525305 14525949 Lal10g0672 10 14525305 14525949 ECH
Lal10g0672 10 14525305 14525949 Lal8g0750 8 5387359 5388078 LSH