Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0643 ATGACAATTCAACAATATATGTGTCTCATATTAAGGGCTAGCTTTTGCATTATTTTGGTTCTTAATCTTGTGGCAGCCATTAGCATTCAAGAAAAGAAAGAAGCACATGAAAAATTCATTGACCAACTATTTGATCCTGCATCTCAAGTGTTGAATGAGGGCACGGCGGAGGTATTATGGACCACTTGCCGTGAAGATTTGATTCATTTAAGGAAAGAAATTGGAGATCTTGACTTGTGCCCACATGAATTATCACGTATTACGAATGAAATTAGTCCAGAAATCGGATTAATAGCACACAAAAACATCCAAAAGTTGATCAATACTTGCCATCCTCAGTTGAAAGAATTTTTTTTACGCTGCTTGAGTAAAAATAATCTTCCACTCCATGTCTCTGGAGAATATAAGGGATCCCTTTCTTCCAGAAGAAAATTGGGTTATGTTTTGCCACAGCATGTATCAGAAACACCAGATGAAGCATCAGAAAACAGTTCTAAAAGTAAACAAAGAACAAATAAGTCCATGTCTCCTGAGCACAAACAATTACTTGTTACTGCTGTAGTTGTAACTGCAGTGATGACATTTGTAGTTGCAGCACTGCTCTTTTTATGTTGTTGTAGGTGTTGCGGGAGTGGCCGAGTTAATCAAACTGATGAGAGGCCCCTTCTAAGCTTGAGTATGAGTGACTACTCTATTGGTTCTTCTTCAAATAATAATGCATATCAAAATTCCATAAAAGATGACAAACCCGGATTTCAGTTATCCAGTAATACTTTGCTTGATGACAACAAGAGCTCAGTGCAGGAAAATCAATTAGTAGGAGCTGCGAGACCATCATTTGAACTAAAACCTCCTCCCGGAAGGGTAGGAGGCACGCCTTCTGGAATGCCTCCTTTGAAACCTCCTCCGGGAAGGACTGTTCCTCTTCCACCCGAGCCACTTTCATCTATGCCTTCTGATAATGACAGTGCTGCTGCTCCTCCCCCTCCTCCTTCAGTACCACAGCAGCCTCCAAGTGGTGGACCTCCACCTCCTGCACCCCCACCACCTCGCAGTGGTGGTCCTCCACCTCCTCAGCCTCCTCCACCACGTGCACCAGGACCTCCGCCACCACGTGCACCAGGACCTCCACCACCACGTGCACCAGGACCTCCACCACCTCGTGCACCAGGACCTCCACCACCTCCTAAGGGCGGTGCAGGTCGTCCTCCACCAATTGGTCCAAAAGGTGCTCGGCCCTTAGCTGGTGGACTAAAGGTTCAGAAGAATGTTGGAGCCGATTCAGAAGCTGATGGTGATGCTCCTAAAGCCAAGTTAAAGCCTTTTTTCTGGGATAAGGTTCAAGCCAACTCTGATCAAACAATGGTTTGGAATCAGATCAAAGCAGGATCATTCCAGTTTAATGAAGAAATGATGGAGACACTTTTTGGCTATGCTGCTGCTGCTGAAAAAACCAAAGCCGAGCATAACAAGAAAGAGTCTACCTCCCATGATCATCTACCTCAGTTTATCCTATTAATTGACTCAAAGAAATCACAAAATTTATCTATCCTGTTGCGAGCATTGAATGTGACACTAGAAGAAGTTTGTGATGCACTTCTTGAAGGAAATGAGCTCCCCTCAGAGTTCCTTCAAACCTTGCTAAAGATGGCACCAACACAAGAGGAAGAACTCAAGCTTAGACTTTTCAGTGGTAACATAGCCCAACTTGGGCCTGCTGATCGGTTCTTGAAAGCCGTAGTCGACATTCCATTTGCTTTTAAACGAATGGAAGCACTGCTTTACATGGGTACTGTTCAAGAGGAGCTCAAAGCTACCAATGAGTGTTTTGCAGTTTTAGAGGTTGCTTGTAAGGAACTGAGAAGCAGCAGGCTGTTCTTGAAGCTTCTTGAAGCTGTTCTTAAAACTGGGAACCGAATGAACGATGGAACATTCCGTGGTGGTGCACAAGCATTTAAACTTGATACACTGCTGAAATTGTCTGATGTAAAAGGTGTTGATGGTAAGACTACTCTCTTACACTTTGTTGTTCAAGAGATAATACGCACCGAGGGTATAAGAGCTGCTCGAATGTCGAAAGAAAGCCATAGTTTCTCTAGTATTAAAACAGAAGACCTCCTTGAAGACATATGTTATGAATCAGAAGATCATTATCACGAGCTTGGTCTTCAGGTTGTTTCACGTTTGAGTAGCGGACTTGAGAATGTTAAGAAAGCGGCAGCTCTCGATGCTGACACGTTAACAGGAACTACTGCCAAACTAGGCCATGGTCTCGTAAAAACCAAAGATTTTGTAAACAACGACCTTAAGAACTCCCCGAGTGATGATAGAGGATTTCAAGAGGCGGTGAAGAGTTTTATCGAGAGTGCTGAGGTTGATGTCACAAGTCTGCTGGAAGAGGAAAAGAAAATCATGGCTCTAGTGAAGAGTACCGGTGATTACTTTCATGGAAATTCTGGGAGAGACGAAGGTTTAAGATTGTTTGTAATAGTACGCGACTTCTTAATAATGTTGGACAGGGTATGCAAAGAGATAAGAATGGTACCAAGAAAGCCATCAGTAAAACATGTGAAACAAGAAACTTCTAGTTCTAGAGGGTCATCTTCAGAAAATCGTCCTCCAACTCCCGATATTCGGCAGCGAATTTTTCCAGCAGTCGTAGATAGGAGAATGGATGACTTTAGTTCAGATGATGACAGTCCATAG 2706 0.4327 MTIQQYMCLILRASFCIILVLNLVAAISIQEKKEAHEKFIDQLFDPASQVLNEGTAEVLWTTCREDLIHLRKEIGDLDLCPHELSRITNEISPEIGLIAHKNIQKLINTCHPQLKEFFLRCLSKNNLPLHVSGEYKGSLSSRRKLGYVLPQHVSETPDEASENSSKSKQRTNKSMSPEHKQLLVTAVVVTAVMTFVVAALLFLCCCRCCGSGRVNQTDERPLLSLSMSDYSIGSSSNNNAYQNSIKDDKPGFQLSSNTLLDDNKSSVQENQLVGAARPSFELKPPPGRVGGTPSGMPPLKPPPGRTVPLPPEPLSSMPSDNDSAAAPPPPPSVPQQPPSGGPPPPAPPPPRSGGPPPPQPPPPRAPGPPPPRAPGPPPPRAPGPPPPRAPGPPPPPKGGAGRPPPIGPKGARPLAGGLKVQKNVGADSEADGDAPKAKLKPFFWDKVQANSDQTMVWNQIKAGSFQFNEEMMETLFGYAAAAEKTKAEHNKKESTSHDHLPQFILLIDSKKSQNLSILLRALNVTLEEVCDALLEGNELPSEFLQTLLKMAPTQEEELKLRLFSGNIAQLGPADRFLKAVVDIPFAFKRMEALLYMGTVQEELKATNECFAVLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRTEGIRAARMSKESHSFSSIKTEDLLEDICYESEDHYHELGLQVVSRLSSGLENVKKAAALDADTLTGTTAKLGHGLVKTKDFVNNDLKNSPSDDRGFQEAVKSFIESAEVDVTSLLEEEKKIMALVKSTGDYFHGNSGRDEGLRLFVIVRDFLIMLDRVCKEIRMVPRKPSVKHVKQETSSSRGSSSENRPPTPDIRQRIFPAVVDRRMDDFSSDDDSP 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0643 901 Gene3D Formin, FH2 domain 435 872 IPR042201 -
Lal10g0643 901 PANTHER FORMIN-RELATED 156 899 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lal10g0643 901 PANTHER FORMIN-RELATED 1 138 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lal10g0643 901 MobiDBLite consensus disorder prediction 851 882 - -
Lal10g0643 901 MobiDBLite consensus disorder prediction 152 176 - -
Lal10g0643 901 MobiDBLite consensus disorder prediction 859 875 - -
Lal10g0643 901 SUPERFAMILY Formin homology 2 domain (FH2 domain) 501 855 - -
Lal10g0643 901 MobiDBLite consensus disorder prediction 290 315 - -
Lal10g0643 901 SMART it6_source 429 853 IPR015425 -
Lal10g0643 901 MobiDBLite consensus disorder prediction 273 415 - -
Lal10g0643 901 Pfam Formin Homology 2 Domain 433 838 IPR015425 -
Lal10g0643 901 PANTHER FORMIN-LIKE PROTEIN 156 899 - -
Lal10g0643 901 PANTHER FORMIN-LIKE PROTEIN 1 138 - -
Lal10g0643 901 ProSiteProfiles Formin homology-2 (FH2) domain profile. 429 864 IPR015425 -
Lal10g0643 901 MobiDBLite consensus disorder prediction 239 259 - -
Lal10g0643 901 MobiDBLite consensus disorder prediction 323 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0643 Lal-Chr10 14266192 14272049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0643 406 892 FH2 protein (formin) Gene Family AT5G54650 65.984 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0643 - - gmx:100792872 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0643 10 14266192 14272049 Lal1g0543 1 3492158 3499401 PCT
Lal10g0643 10 14266192 14272049 Lal2g0432 2 2581310 2588092 PCT
Lal1g0543 1 3492158 3499401 Lal10g0643 10 14266192 14272049 PCT
Lal2g0432 2 2581310 2588092 Lal10g0643 10 14266192 14272049 PCT