Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0611 ATGCCTTACCTTGTTCGAGAGAATCTCTTCATCGGAAACATCGGCGACGCAGCGGAGATTCTCCAAAACGGCAGCGTTTCAATCACTCACATTCTCTCCGTTCTTAGCTCTGCCTCCATCTCCTTCTTCTCCGAATGGCGTAACACTCTCACCATCCCTACCAAGACGATCAACAACCTCCACGTCGGAGCCGCCGCTGATGACGGCGCCAAAACCGCCTTGTCGCCGGAGAAGCTTCTCTACTCGTTGGAGTACGCCGGTAACGATTTGAAGCTGGTCAGGATGGCGGTTCCGATTAGGGATACTGAGAATGAAGATTTGTTGGATTACTTGGAGGATTGCATCGATTTCATTGATCGGAGTAGGAAGGAAGGTTCTGTTTTGGTTCACTGTTTTGCTGGAGTTTCTAGAAGTGCGACAGTTATTACAGCATATTTGATGAGAACTGAACATCTATCTCAAGAAGATGCCCTTGAATCATTAAGGCAAAGCTGTGAATTTGTTTGCCCCAATGATGGCTTTTTAGAGCAGTTAAAAATGTTTGAGGAGATGGGCTTCAAGGTTGATTATTCTAGTCCTATATACAAGCGCTTTCGTCTGAAAATCCTAGGTGATCATTTCTCTGGGTCAGGAATAGACAGTTCTAAACTTGGTGCAGACCCCGGCATGCCTGTCCAAATTTCTTCAGATGTGGAAGAAGCTAACAAAGTAGAAAATAAGCGTAGACTTACATATCGCTGTAAGAAGTGCCGACGGGTGGTTGCATTGCAAGAAAATGTGGTAGATCATACTCCCGGAGAGGGTGAGACATCCTTTGAGTGGCACAAGCGGAGAAGTGGCAACCCTTTTGACAAGTCTAATGAATATGAGTGTTCATCCATATTTATTGAACCTCTACGATGGATGAAAGCTGTCGAGGAAGGCGCGTTGGAGGGAAAGCTGTCCTGTGTTCATTGTGATGCTCGTTTGGGATACTTCAATTGGACAGGCATACAATGCAGCTGTGGAAGCTGGATCACCCCAGCTTTTCAACTCCACAAAGGTCGTGTAGATATAAGCCCTGTGTAA 1068 0.4607 MPYLVRENLFIGNIGDAAEILQNGSVSITHILSVLSSASISFFSEWRNTLTIPTKTINNLHVGAAADDGAKTALSPEKLLYSLEYAGNDLKLVRMAVPIRDTENEDLLDYLEDCIDFIDRSRKEGSVLVHCFAGVSRSATVITAYLMRTEHLSQEDALESLRQSCEFVCPNDGFLEQLKMFEEMGFKVDYSSPIYKRFRLKILGDHFSGSGIDSSKLGADPGMPVQISSDVEEANKVENKRRLTYRCKKCRRVVALQENVVDHTPGEGETSFEWHKRRSGNPFDKSNEYECSSIFIEPLRWMKAVEEGALEGKLSCVHCDARLGYFNWTGIQCSCGSWITPAFQLHKGRVDISPV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0611 355 ProSitePatterns Tyrosine specific protein phosphatases active site. 129 139 IPR016130 GO:0016311|GO:0016791
Lal10g0611 355 CDD DSP_DUSP12 4 189 - -
Lal10g0611 355 SMART dsp_5 1 184 IPR020422 GO:0006470|GO:0008138
Lal10g0611 355 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 4 186 IPR029021 -
Lal10g0611 355 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 105 163 IPR000387 GO:0016311|GO:0016791
Lal10g0611 355 Pfam Dual specificity phosphatase, catalytic domain 93 183 IPR000340 GO:0008138|GO:0016311
Lal10g0611 355 Gene3D Protein tyrosine phosphatase superfamily 4 204 IPR029021 -
Lal10g0611 355 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 351 - -
Lal10g0611 355 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 187 IPR020422 GO:0006470|GO:0008138
Lal10g0611 355 PIRSF DUSP12 3 58 IPR016278 GO:0006470|GO:0008138
Lal10g0611 355 PIRSF DUSP12 80 355 IPR016278 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0611 Lal-Chr10 13883385 13889648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0611 92 183 Protein tyrosine phosphatase (PTP) family AT3G06110 38.710 8.28e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0611 K14819 - gmx:100804683 588.571