Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0608 ATGCACCATCATCATCAACATCAAATGGTAATGGAGAACTCTGAGTTGTTACAATTACTAGCATCATCATCAACAACAACAACCACTATGCATCAAAGCTTGTGTAGTAGTTCCTCTAATAATTATAGTTACCCTTTGGAGTTTTCAGAAATTACTGATGCACTTTCCAATCAGCAAGATAGAGCACTTGCTGCTATGAAGAATCATAAGGAGGCTGAGAAGAGAAGAAGGGAGAGAATCAATTCTCACCTTAATCAACTTCGCACTCTTCTTCCTTGTAATTCTAAGACAGACAAGGCTTCACTTCTTGCAAAGGTTGTCGAGCGAGTGAAAGAGCTGAATCAGCAAACATCTAAGATCATTGAACTCGAAACCCTTCCATCGGAAACTGACGAGATCACCATAGTCAGCACGACTATTGATGGTGACTATGGTGATCTCGTCGGTGATGGAAGGATCATATTCAAGGCCTCTTTATGCTGTGAGGATCGCTCCGACCTCATCCCTGACATCATTGAAATCCTCAACTCTCTTCATTTGAAAACCCTCAAAGCAGAAATGGCAACACTTGGAGGAAGAACACGCAACATTCTTGTTGTTGCTCCCGATAAGGATCACAGCATTGAGTCAATCCATTTCCTTCAGAACTCGTTCAAGTCTCTGCTAGAACGCTCCGACTCTAGTGACAGATCGAAACGACGACGTGGGTTGGACCGAAGACTCATGCCTTAA 732 0.4276 MHHHHQHQMVMENSELLQLLASSSTTTTTMHQSLCSSSSNNYSYPLEFSEITDALSNQQDRALAAMKNHKEAEKRRRERINSHLNQLRTLLPCNSKTDKASLLAKVVERVKELNQQTSKIIELETLPSETDEITIVSTTIDGDYGDLVGDGRIIFKASLCCEDRSDLIPDIIEILNSLHLKTLKAEMATLGGRTRNILVVAPDKDHSIESIHFLQNSFKSLLERSDSSDRSKRRRGLDRRLMP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0608 243 Coils Coil 55 75 - -
Lal10g0608 243 CDD bHLH_AtAIG1_like 59 135 - -
Lal10g0608 243 Gene3D - 59 124 IPR036638 GO:0046983
Lal10g0608 243 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 12 241 - -
Lal10g0608 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 122 IPR036638 GO:0046983
Lal10g0608 243 Pfam Helix-loop-helix DNA-binding domain 68 113 IPR011598 GO:0046983
Lal10g0608 243 SMART finulus 70 119 IPR011598 GO:0046983
Lal10g0608 243 PANTHER TRANSCRIPTION FACTOR BHLH30 12 241 IPR045847 GO:0003700|GO:0006355
Lal10g0608 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 113 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0608 Lal-Chr10 13833644 13835615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0608 23 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 63.256 4.48e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal10g0608 HLH 5.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0608 - K22484 gmx:100802566 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0897 8 6589962 6591531 Lal10g0608 10 13833644 13835615 LSH