Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0593 ATGGATTTCGAAATCGACAACGACAATGATCATTCTTCTCAATCCTCACAATCTCAAACCCACCACCTTCTCGGTTTCATCATCGCCAACATTGTCGGAACCAGATACTACCCTGGTTTCATCAGTGGTCGTGAAATGGTGGGTTTGGTCCGTGAACCCCTTAACCCATACGATTCCAACGCAATCAAAGTTCTCAATACCCAAACCCTTCAAGTGGGTCACATTGAACGTTCTGTTGCTGCTGTATTATCTCCTCTTATTGATTCAAATGACATTCTTGTCGAAGGCATTGTTCCTAATTCTCGCTCTAAGGGTAAGATTCCTTGTCAAGTTCATATCTTTGCGGCGGATTACGCCTTCCCCACTTTGAAAGAATTGATTTTGAGTAGTGGGTTGCAATTGATTTCGGATTCTGATGCTGCTTTTACTATGTCTGAGTCTATGGCGGTTAAAGAGACTCGGGCCGAGAAAAGGATTAGGAATGTGGATGATATTTTTAAGCTTGTTGATGAGACGAATAGGAATCGCGGGGTTGAGGCTTTGGTGCCATCGAAAAGTGTGATTAAGACTGAGCTTTTGAAGCATCAGAAGGAAGGTTTGTGGTGGTTAGTTCATAGAGAGAATTCCAATGAGTTGCCGCTGTTTTGGGAAGAGAGAGATGGTAACTATGTTAATGTGTTAACGAATTATAAAACTAATGTGAGGCCTGAACCTTTGAGAGGTGGAATTCTTGCAGATGATATGGGGTTAGGGAAGACTTTAACTTTGATTTCTTTGATTGCTTTTGACAAAGAACAAAGCATTGTTGACACTAGCGGTGAAGTGAGGGATGAAGGATTGAGTTTGTCTATTAAGAAGGGTAAGAGGGGAAGGACAAACAAAGAGGGTAGTGGTTCGCAGAAAAAACGCAAGATTATGAGTCATTCTTTAGATGAATTATCTATAGGAAAAGAGGTTAGTGTGGCTGATACATGTTCCATTGACATGAAAACAAAAACAACATTGGTTGTGTGCCCTACTTCTGTGTTGTCAACATGGATATCACAACTAGAAGAACATACCGAACGAGGTTCGTTGAAGGCTTATTTGTATTATGGGAACAGAACCAAGGATGCTGATGAACTTAAGATGCATGATTTAGTATTGACCACATATGCCACTTTATCAAGTGAAGAAACATCATCGGACTCGCCTCTAAAGAAAATAGAGTGGTGGAGAATCATTTTGGACGAAGCACACACGATAAAAAATGTCAATGCTCAGCAGAGTAAAGCAGCCATTAAACTGAATGCTAAGCGGAGGTGGGCTGTTACAGGGACACCAATTCAAAATGGTTCATACGATTTGTTTTCTATTATGGCATTTTTAAAATTCGAACCATTTTCGATAAAGAACTATTGGCGAAGCTTGGTGCAACGTCCTCTCAATCAGGGATTGGAGAAAGGGCTCTCTCGTTTGCAGGTTTTGATGGCAACAATTTCATTACGAAGAACAAAAGACAAGGGATTGGTAGGGCTGCCATCAAAGACAATAGAGACTCATTATGTTGAACTTTCTTTGGAAGAACGTGAACTGTATGATCTGGTCAAAGCAGAATCGAAGAGATTGATGACGGGTTATATCAATAATGGTAGTCTTGTGAACCATTATTCTAGTGTACTTAGTATGATTCTACGACTTCGCCAAATCTGTACTGATTTGGCACTGTGCCCTTCGGATCTCAAATCAGTACTCTGTTCAACAAATATTGAAGATGTTTCCAATAACCCTGAATTGCTAAAATCATTGATTGAGGTGCTGCAAGATGGTGAAGATTTTGATTGTCCGATTTGTATATCTCCACCAACAAATATTGTAATTACATGCTGTGCTCACATTTATTGTCGCGAGTGTATTCTCAGAACTCTACAATGCAGCAACCCTCGTTGTCCTCTTTGTCGTCACCCCCTCTCAGAGTCTGACTTGTTCTCGGCCCCTCCCGAATCAACGAAGATCGCTGATGTTGAACTTTCCTCATCAGAACCAAAACTATCTTCCAAAGTGTCCGCTCTGATAAAACTTCTCATTGACTCAAGGGACCAAAATCCTGCAACAAAATCAGTTGTATTTTCACAATTCCGTAAGATGATACTTTTACTCGAAGAGCCTCTAAAAGCAGCTGGTTTCAAGACTCTGCGTCTCGATGGGAATATGAATGCGACACAAAGGGCCTCTGTTATCGAGCAATTTAGAGTCTCGGGAAGAGAGCCAATGGTTATGCTTGCAAGCCTTAGAGCTTCAAGTACAGGTATAAATCTCACGGCTGCGTCTAGAGTATACTTTATGGAGCCATGGTGGAACCCCGCGGTTGAGGAACAGGCAATGGACCGTGTCCACCGCATCGGACAAAAAGAGGATGTCAAGGTTTTTAGATTGGTTGCCCAAAACAGCATTGAGGAAAGGATATTAATGTTGCAAGAGAAGAAGAAAAGGTTGGCAATGGAAGCATTTGGGAAGGGATCAAAGGATGTTGGCATGGGTATGGATGATGTACGTTTCCTTTTGTCCCAATGA 2553 0.4152 MDFEIDNDNDHSSQSSQSQTHHLLGFIIANIVGTRYYPGFISGREMVGLVREPLNPYDSNAIKVLNTQTLQVGHIERSVAAVLSPLIDSNDILVEGIVPNSRSKGKIPCQVHIFAADYAFPTLKELILSSGLQLISDSDAAFTMSESMAVKETRAEKRIRNVDDIFKLVDETNRNRGVEALVPSKSVIKTELLKHQKEGLWWLVHRENSNELPLFWEERDGNYVNVLTNYKTNVRPEPLRGGILADDMGLGKTLTLISLIAFDKEQSIVDTSGEVRDEGLSLSIKKGKRGRTNKEGSGSQKKRKIMSHSLDELSIGKEVSVADTCSIDMKTKTTLVVCPTSVLSTWISQLEEHTERGSLKAYLYYGNRTKDADELKMHDLVLTTYATLSSEETSSDSPLKKIEWWRIILDEAHTIKNVNAQQSKAAIKLNAKRRWAVTGTPIQNGSYDLFSIMAFLKFEPFSIKNYWRSLVQRPLNQGLEKGLSRLQVLMATISLRRTKDKGLVGLPSKTIETHYVELSLEERELYDLVKAESKRLMTGYINNGSLVNHYSSVLSMILRLRQICTDLALCPSDLKSVLCSTNIEDVSNNPELLKSLIEVLQDGEDFDCPICISPPTNIVITCCAHIYCRECILRTLQCSNPRCPLCRHPLSESDLFSAPPESTKIADVELSSSEPKLSSKVSALIKLLIDSRDQNPATKSVVFSQFRKMILLLEEPLKAAGFKTLRLDGNMNATQRASVIEQFRVSGREPMVMLASLRASSTGINLTAASRVYFMEPWWNPAVEEQAMDRVHRIGQKEDVKVFRLVAQNSIEERILMLQEKKKRLAMEAFGKGSKDVGMGMDDVRFLLSQ 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0593 850 Gene3D - 299 498 IPR038718 -
Lal10g0593 850 CDD SF2_C_SNF 677 806 - -
Lal10g0593 850 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 683 845 IPR001650 -
Lal10g0593 850 ProSitePatterns Zinc finger RING-type signature. 623 632 IPR017907 -
Lal10g0593 850 SMART helicmild6 711 795 IPR001650 -
Lal10g0593 850 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 8 272 - -
Lal10g0593 850 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 317 835 - -
Lal10g0593 850 Pfam Zinc finger, C3HC4 type (RING finger) 605 651 - -
Lal10g0593 850 MobiDBLite consensus disorder prediction 285 304 - -
Lal10g0593 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 591 672 IPR013083 -
Lal10g0593 850 SMART HIRAN_2 24 117 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lal10g0593 850 Pfam Helicase conserved C-terminal domain 680 795 IPR001650 -
Lal10g0593 850 ProSiteProfiles Zinc finger RING-type profile. 608 647 IPR001841 -
Lal10g0593 850 SMART ring_2 608 646 IPR001841 -
Lal10g0593 850 Pfam HIRAN domain 25 114 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lal10g0593 850 Pfam SNF2-related domain 195 567 IPR000330 GO:0005524|GO:0140658
Lal10g0593 850 Gene3D - 15 134 - -
Lal10g0593 850 Coils Coil 808 828 - -
Lal10g0593 850 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 459 IPR014001 -
Lal10g0593 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 833 IPR027417 -
Lal10g0593 850 Gene3D - 161 276 IPR038718 -
Lal10g0593 850 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 317 835 - -
Lal10g0593 850 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 8 272 - -
Lal10g0593 850 SMART ultradead3 188 471 IPR014001 -
Lal10g0593 850 SUPERFAMILY RING/U-box 604 656 - -
Lal10g0593 850 Gene3D - 507 848 IPR027417 -
Lal10g0593 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 497 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0593 Lal-Chr10 13638590 13643090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0593 4 849 RAD5 or RAD16-like Gene Family AT5G05130 59.070 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal10g0593 SNF2_N 4e-74 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0593 K15711 - vvi:100263696 1094.34