Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0592 ATGAAGTCTTTGTCACTGGATCACTGGAGGAGTTACTTCCGTTCCGCGAATTCGGATATATTTGAGATAATTCATCATTCGATCATGGTAGCTGCTTCAGATTGTCCTAAAGAGTTCAGGTTGAGAAGGGATAAGATTGCAGAGACTTTGTTCTCTTGCAAGTTGAGTCGTTGTGTTGGGTGTGATAGGGTGGAGTTGGCTGTGTCTGCTGTTGATAAAGAACATAATGATGATGATGATGATGATGGTGTTGAATTTGAGGCAGGTGCAAGCAAAGAGAGCAAGGTCAATGGTGGTGGTATCAGAGAGGATCATAGAGATATGAATGTGAATCATGTTAGCAATTTTAGCTTTGGAGATGCCGAGGCTTTGACTGATGAGATTGAAGAAGAGTCTCAGTATGTTGGGGAGGTTTTGAGGATCAAAGACATTCTCCTTAACCATGAAGAAGAGTCTGACTCTGTCTTATTTGAGTCATTAAGGAGGCTACAGCTGATGGAGTTAACTGTGGATCGTTTAAAGGCTACTGAGATTGGAAAGGCTGTTAATCCCCTACGAAAGCATGGATCAAAGGAAATTCGTCAACTCGCACGAACTCTTATCGGTGAATGGAAAGAAATGGTTGACGAGTGGGTCAAGGCTACCACTACTGCTGCTATTGCAGCTTCAGAAGGCACTCCAGATTCAGTAAATCCATCGGTTGTTGATGACGACGAAGAAGGACTTCCGTCACCTCCTATGGATGAAGGGGCTTTCTTTGTTACACAAGCCGGTTCGATAGAACTTTCACAGTTCTTCGATGGCATAGATGATTACGGAAATCCTCGACAGAGTGGACAGTCCAACAGAAACCGTGAAAATGGCAGAAAGCCTTCTATGGACAGTCACACTATAGAAAAGGGGATAATGCATGCTTCCAATGCAACAAGCATCACTAACAAGGACAGTAAGAGTCAGCAAGCAAAGAAAAACGAGGCTGGAGTGAGTTTGAACAAGCCTCTAAATGCTGATTCTGGCCTCGGCAGACCACCAAAATCGAGTATACAGCGAAAAAGCAATGCTCAGCCAAAAATGCAACAAAAAGTAGATAACAATACTCTCACAAAGAGGCCGTCAATCGGTCAGCAAAATAAATTGAAGTATTCGGATGATGCTGCGGTCCAAGTGAAGCTAGAAGCCACCAAGAGGAAACTTCAAGAGCGTTATCAACAAGCTGAAAATGCAAAGAGACAGCGTACAATACAAGTTATGGAATTGAACGATCTGCCGAAACAAGCGGTTGTCCACCGAAATCCACATTTCAAACCTGGAAATCATAATAGGCACTGGGGGGCTCAAGCACGACGATAG 1350 0.4363 MKSLSLDHWRSYFRSANSDIFEIIHHSIMVAASDCPKEFRLRRDKIAETLFSCKLSRCVGCDRVELAVSAVDKEHNDDDDDDGVEFEAGASKESKVNGGGIREDHRDMNVNHVSNFSFGDAEALTDEIEEESQYVGEVLRIKDILLNHEEESDSVLFESLRRLQLMELTVDRLKATEIGKAVNPLRKHGSKEIRQLARTLIGEWKEMVDEWVKATTTAAIAASEGTPDSVNPSVVDDDEEGLPSPPMDEGAFFVTQAGSIELSQFFDGIDDYGNPRQSGQSNRNRENGRKPSMDSHTIEKGIMHASNATSITNKDSKSQQAKKNEAGVSLNKPLNADSGLGRPPKSSIQRKSNAQPKMQQKVDNNTLTKRPSIGQQNKLKYSDDAAVQVKLEATKRKLQERYQQAENAKRQRTIQVMELNDLPKQAVVHRNPHFKPGNHNRHWGAQARR 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0592 449 Pfam TFIIS helical bundle-like domain 160 208 IPR017923 -
Lal10g0592 449 ProSiteProfiles TFIIS N-terminal domain profile. 136 211 IPR017923 -
Lal10g0592 449 MobiDBLite consensus disorder prediction 220 250 - -
Lal10g0592 449 MobiDBLite consensus disorder prediction 302 326 - -
Lal10g0592 449 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 448 IPR044805 -
Lal10g0592 449 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 127 221 IPR035441 -
Lal10g0592 449 MobiDBLite consensus disorder prediction 74 104 - -
Lal10g0592 449 MobiDBLite consensus disorder prediction 428 449 - -
Lal10g0592 449 CDD TFIIS_I 137 209 - -
Lal10g0592 449 MobiDBLite consensus disorder prediction 434 449 - -
Lal10g0592 449 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 448 - -
Lal10g0592 449 Coils Coil 388 415 - -
Lal10g0592 449 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 215 IPR035441 -
Lal10g0592 449 SMART TFS2_5 135 210 IPR003617 GO:0005634
Lal10g0592 449 MobiDBLite consensus disorder prediction 266 374 - -
Lal10g0592 449 MobiDBLite consensus disorder prediction 345 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0592 Lal-Chr10 13607569 13611775 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lal10g0592 Med26 8.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0592 - - gmx:100799367 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0902 8 6676317 6680599 Lal10g0592 10 13607569 13611775 LSH