Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0590 ATGAGAGAAGAAGATTCAAACTGGTTTTCAAGATGGGAAGAGAAACTACCTTCCCCAGAGGAACTCATGCCCTTATCCCAAACCCTAATCACTTCTGATCTAGCCATAGCCTTCAATATCAAAACCAACAACCACAACAACAACAACAACATCATTCAAAAACAGCAACAAAGTCTTCATCTTCAACAACAACAACATAATATTGAGCTTCACCAACAACAACAGCAATTGCCAACAACAACTTCAAACCCCACCACCCAAAACCTACAGCAACCATCCTCCGGCGACTTTGCTGACTCCGGCGAGATGGGCTCTGGCAACGGCGGCGATGAACCAGCACGGACACTCAAGCGTCCGCGCCTTGTGTGGACCCCGCAGCTCCACAAGCGCTTCGTCGACGCCGTGGCCCACCTCGGCATCAAGAACGCCGTGCCCAAGACCATAATGCAGCTTATGAGCGTCGATGGTTTGACCCGAGAGAACGTCGCGAGCCACCTCCAGAAATACCGCCTTTATCTCAAGCGAATGCAGGGGCTTTCCGGCGGCGGCTCCGGTGGCGGTGGTGGTGTTGATGCGGCCACCGACCACTTGTTCGCCAGCTCGCCTGTGCCGCCGCATTTCTTGCAACCAGGGAGGAGTAATTCGGAACATTTCATGCCTTTTGTGCAGATGCCTGCCCTCCAGCACCACCATCAGATGGCTGCGGCTGCAGCCGTGCAGCAGCCGCAATATCACAGGCAGGTGGGGCATTTCGGGTCGCAGTCGAATGGGCACTTTGAGCATCCTTTCATGACTAGGCAGTCTCAACAGCAGCTTCATAGAATGGGTGCACCAATGCATAGCCCTGTGGGTGGTTTTGTTGAGGACATGGAATCAGCAAATGTGTCCAGAGGGAGAAAGTTGTGTGGTGCTAAGGCTTCCTCAGTGTTGATTTATCTTGTAGTTGTCTGGGAATGGCTGATGCTAAACGTAACGCATATTCATGGCAAGAGAGTTTCGGCTTGGGAAGTTTTCTATTGGCATTCATGGCCAGGAGTGTCCTTACCTGGGAAGTTCTCTATTCGCATTTGTGGCAGGACTGCGGCAAAGGCAACAAGGTTTGGTATTGATGGGCCTGCTGGTGAGGTGAGTTGTGAACTCAAGGAAATTAGTTTCCATAGATTTCTAAATTTACAAAAGGTGAGCCTCGACGCAACCGTAAGGTTGCTTGCCTTGTGA 1218 0.5123 MREEDSNWFSRWEEKLPSPEELMPLSQTLITSDLAIAFNIKTNNHNNNNNIIQKQQQSLHLQQQQHNIELHQQQQQLPTTTSNPTTQNLQQPSSGDFADSGEMGSGNGGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGSGGGGGVDAATDHLFASSPVPPHFLQPGRSNSEHFMPFVQMPALQHHHQMAAAAAVQQPQYHRQVGHFGSQSNGHFEHPFMTRQSQQQLHRMGAPMHSPVGGFVEDMESANVSRGRKLCGAKASSVLIYLVVVWEWLMLNVTHIHGKRVSAWEVFYWHSWPGVSLPGKFSIRICGRTAAKATRFGIDGPAGEVSCELKEISFHRFLNLQKVSLDATVRLLAL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0590 405 MobiDBLite consensus disorder prediction 71 100 - -
Lal10g0590 405 Gene3D - 115 177 - -
Lal10g0590 405 Pfam Myb-like DNA-binding domain 122 170 IPR001005 -
Lal10g0590 405 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 171 IPR006447 GO:0003677
Lal10g0590 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 174 IPR017930 -
Lal10g0590 405 SUPERFAMILY Homeodomain-like 115 175 IPR009057 -
Lal10g0590 405 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 296 - -
Lal10g0590 405 MobiDBLite consensus disorder prediction 71 118 - -
Lal10g0590 405 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 296 IPR044841 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0590 Lal-Chr10 13579269 13581131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0590 1 302 G2-like Transcription Factor Family AT3G10760 56.522 1.33e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal10g0590 Myb_DNA-binding 3.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0590 - - jre:108983410 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0908 8 6748075 6748893 Lal10g0590 10 13579269 13581131 LSH