Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0573 ATGCTTGTTCAATTGGCATTGAAGCAAGTGGTTATTATGCAAAGGGAGGCACAAGAATTTGAACATAACATGGTGACAAAGAAGCATAAAGTTGTACATAATGATTGTTTGAAGCTCTATGAGAACACTATCTTCCATCTCAACCGTACCCTTGAAGGACTACACGTGAAGAGAAATTGTTCACCAGTTGATGTACAAACTTGGCTCAGCACTGCTCTTACAAACATCCAAACTTGTGGAACCGGGGTAGTAGAACTTAGTGTTGAAGATTTCATGGTGTCAAAACTGAGTGGTAATATAACTGAGATGATAAGGAACAGCTTAGCCATCAATATGGATTTCCTGAAACAAAATGCAGAAAATCAGAAATCAGAAACAAAAGAAGCTTTTCCTAGTTGGTTTTCTAGGCATGATAGGAAGCTCTTGCAGGCTAACTCAAAAACAAAGGCACATCTTGTAGTTGCAAGAGATGGTTCGGGGCATTTCAAGAATGTCCAAGATGCTTTAAATGCAGCAGCAAGGAGAAAAATAAAGACTAGGTTTATCGTACATGTGAAGAAAGGAGTCTATGTAGAGAATATTGAGGTAGAGAAGAACAATGATAACATCATGTTGATTGGTGATGGCATGGCAAATACAATAATAACAAGTAGCAGAAGTGTTCAAGATGGCTTCACTACTTATAGCTCAGCAACTGCAGGCATAGATGGCCTCCACTTCATAGCACGTGACATAACCTTCCAAAACTCAGCCGGTGCTCTAAAGGGTCAAGCGGTGGCACTCCGATCAGCCTCCGATCTCTCCGTCTTTTACCGGTGTGCCATAGCAGGTTACCAAGACACACTCATGGTTCATGCACAGCGTCAATTTTACAGGCAATGCTACATATATGGCACTGTAGATTTCATATTTGGTAATGCTGCAGTAGTGTTCCAAAATTGTAATATTTTTGCTAGAAAGCCTTTAGATGGCCAAGCAAACATGATTACAGCACAAGGTAGAGGAGACCCATTTCAGAACTCAGGAATTTCAATCCATAATTGCCAAATAAAAGCTGCACCAGACCTAAAGCCAGTTGCTGACAAATACAACACCTTTTTGGGACGACCATGGCAGCAATACTCAAGAGTGTTGGTTATGAAAACTTTCATGGATACCTTAGTGAACCCATCTGGTTGGTCTCCATGGGGTGATAGTGATTTTGCTCAGGATACATTATACTATGGAGAGTATCAAAATTATGGGCCAGGTTCGTCTACAAGCAAAAGAGTAAAATGGCCTGGTTTTCATGTGATAACAAGCAAAGCTGAGGCATCTAAGTTCACAGTCACAGGTCTTCTTGCAGAGTGGAGGGAGCCTCCAACTACTGGGGAGTTGCATTGTTACCGGAGTGCATCATGTGATGGGGTCAGAATATTGTGA 1422 0.4135 MLVQLALKQVVIMQREAQEFEHNMVTKKHKVVHNDCLKLYENTIFHLNRTLEGLHVKRNCSPVDVQTWLSTALTNIQTCGTGVVELSVEDFMVSKLSGNITEMIRNSLAINMDFLKQNAENQKSETKEAFPSWFSRHDRKLLQANSKTKAHLVVARDGSGHFKNVQDALNAAARRKIKTRFIVHVKKGVYVENIEVEKNNDNIMLIGDGMANTIITSSRSVQDGFTTYSSATAGIDGLHFIARDITFQNSAGALKGQAVALRSASDLSVFYRCAIAGYQDTLMVHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCNIFARKPLDGQANMITAQGRGDPFQNSGISIHNCQIKAAPDLKPVADKYNTFLGRPWQQYSRVLVMKTFMDTLVNPSGWSPWGDSDFAQDTLYYGEYQNYGPGSSTSKRVKWPGFHVITSKAEASKFTVTGLLAEWREPPTTGELHCYRSASCDGVRIL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0573 473 Pfam Pectinesterase 152 447 IPR000070 GO:0030599|GO:0042545
Lal10g0573 473 CDD PMEI-like_3 1 111 - -
Lal10g0573 473 ProSitePatterns Pectinesterase signature 2. 296 305 IPR033131 -
Lal10g0573 473 SMART PMEI_2 1 110 IPR006501 GO:0004857
Lal10g0573 473 PANTHER PECTINESTERASE 1 449 - -
Lal10g0573 473 Gene3D - 145 457 IPR012334 -
Lal10g0573 473 SUPERFAMILY Pectin lyase-like 148 447 IPR011050 -
Lal10g0573 473 TIGRFAM PME_inhib: pectinesterase inhibitor domain 26 111 IPR006501 GO:0004857
Lal10g0573 473 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 111 IPR035513 -
Lal10g0573 473 Pfam Plant invertase/pectin methylesterase inhibitor 3 110 IPR006501 GO:0004857
Lal10g0573 473 Coils Coil 105 125 - -
Lal10g0573 473 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 114 IPR035513 -
Lal10g0573 473 PANTHER PECTINESTERASE 1 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0573 Lal-Chr10 13397748 13399609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0573 1 457 Carbohydrate Esterase AT3G47400 56.774 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0573 K01051 - gmx:100806133 717.613