Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0572 ATGGAGGACAAAAAGATGAAGCGCAAGATGGATGAGACACCAACTTTGAGTGTTGCTGAATCAAAACGTTCACAGTGTCTCAGACTTGGTAGCAACCCTATTGTTCGTGAATCATCATCATGGAAGTCCTCAAAGAAATCCTATGAGCCCTCCAATGATAGAGATCGGAAAGAAGATCCACCACTTAAGTATGTTTGTCAATATTGTGAGAGAAAATTCTCAAGCTCTCAAGCACTTGGGGGGCATCAAAATGCTCATAAACATGAGCATGAACGGCAAATGAAAAAGGAAAAGGAGAAATTATTACATGGTTCACAATCTGATATCGATGCTCGCTTTTCGACTCGTCCATATCCAAACATGGTAAACAACTATCAATATTCGCCCTCGAACCTTTACTATGGGGCGCGATTTCCATACCCTATGGCTCAAATTCCTACCATGTCTTCACCCCACCATTCATCCATTGGCTATGGTCAATACCAAGGGTTACATGTCCCAAACACATCCCTCCATGGACACCAATTTGGGAACGTTACTAGTTCTTTGGGTCATGGTGCAATTCCACCAAGATACAACAATTTCCAAGGTTTGAGACATTTTCAAGGTCAAGCTTATGCTGCTGTTGGAAACCCTCTTGAGAATCCTAGTGTGTCTCTTGATGCACCACAAGCCTCAGAGGAGATAGATTTAACTCTCAAGCTTTGA 708 0.4237 MEDKKMKRKMDETPTLSVAESKRSQCLRLGSNPIVRESSSWKSSKKSYEPSNDRDRKEDPPLKYVCQYCERKFSSSQALGGHQNAHKHEHERQMKKEKEKLLHGSQSDIDARFSTRPYPNMVNNYQYSPSNLYYGARFPYPMAQIPTMSSPHHSSIGYGQYQGLHVPNTSLHGHQFGNVTSSLGHGAIPPRYNNFQGLRHFQGQAYAAVGNPLENPSVSLDAPQASEEIDLTLKL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0572 235 MobiDBLite consensus disorder prediction 17 46 - -
Lal10g0572 235 MobiDBLite consensus disorder prediction 83 106 - -
Lal10g0572 235 MobiDBLite consensus disorder prediction 77 113 - -
Lal10g0572 235 ProSitePatterns Zinc finger C2H2 type domain signature. 66 88 IPR013087 -
Lal10g0572 235 PANTHER ZINC FINGER PROTEIN KNUCKLES 42 235 - -
Lal10g0572 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Lal10g0572 235 MobiDBLite consensus disorder prediction 1 16 - -
Lal10g0572 235 MobiDBLite consensus disorder prediction 1 59 - -
Lal10g0572 235 Pfam C2H2-type zinc finger 64 87 - -
Lal10g0572 235 SUPERFAMILY beta-beta-alpha zinc fingers 63 90 IPR036236 -
Lal10g0572 235 PANTHER ZINC FINGER PROTEIN JAGGED 42 235 IPR045320 GO:0003700
Lal10g0572 235 Gene3D Classic Zinc Finger 37 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0572 Lal-Chr10 13379940 13380647 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0572 61 119 C2H2 Transcription Factor Family AT5G57520 50.847 8.28e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal10g0572 zf-C2H2_6 3.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0572 - - lang:109358021 207.994