Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0568 ATGCCAAATATTGAGGAGAAAAAGCTCAAACGCAAGATGGATGATGCACCGACCGTGGAAAGTGCTGATCCCAAGCCTTCAGAGGCTTTGAGGACCAGTGATAATTCCACGGTCGATGAATCAACACCTAGGCCTTTTAAATCAATGAGAACTTCCGATGAGTATGATTCTTTAGTGAAATCCTCTGAGCCCTCGAATGATAGAGAACTCAAGGAAAATATACCACAAGATCATTCATGCCCATATTGTGATAGAAAATTCTCAAGCCCTCAAGCACTTGGGGGTCACCAAAATGCTCACAAGCATGAGCGATTACTTGAAAAAGAGAAGAACAAATACATGTATGGTGATGAGTTTGGTTCCTGCTATCCAAGACATGCATATTCATATTTGACAAACTATTACCAAGGTTCATCTTTGAACCTTTATCATGGTGCACAGTTGCAGCACCCCATGGTTCAGATTCCAAGCATTTCAAGCCCTAGGCTTTCATCCATTGCTTATGGTCATCACCAAGGGTTACACTTGCCAAGCACATCCTTCAATGGACACCCATTGGGGAGTACTAGTTCTTGGAGTGGTGGTGGTGGCGGCGGTGATGGTGGTGGTGGTGGTGGTGGTGCAATTACACCAATGTCAAACTTCCAGGGTTTGAGTCTGTTTGGTCCAATCAATCAGATATCTCTACCTATTATCAATGAGGCTAATGAAGTTCAAGGCCATGCTGGTGTTGGAAACTATGTTGAAGATCTTAGGCTTTCTCTTGCTGCACCTCAAGCCTCACCTGAAGAACCTAACGTGTCTCCTACAACTCAAGCCTCACAGGAATTGGATTTGACTCTCAGACTTAGCTTTCCCTAG 861 0.4413 MPNIEEKKLKRKMDDAPTVESADPKPSEALRTSDNSTVDESTPRPFKSMRTSDEYDSLVKSSEPSNDRELKENIPQDHSCPYCDRKFSSPQALGGHQNAHKHERLLEKEKNKYMYGDEFGSCYPRHAYSYLTNYYQGSSLNLYHGAQLQHPMVQIPSISSPRLSSIAYGHHQGLHLPSTSFNGHPLGSTSSWSGGGGGGDGGGGGGGAITPMSNFQGLSLFGPINQISLPIINEANEVQGHAGVGNYVEDLRLSLAAPQASPEEPNVSPTTQASQELDLTLRLSFP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0568 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Lal10g0568 286 Pfam C2H2-type zinc finger 78 101 - -
Lal10g0568 286 PANTHER ZINC FINGER PROTEIN JAGGED 63 283 IPR045320 GO:0003700
Lal10g0568 286 MobiDBLite consensus disorder prediction 179 195 - -
Lal10g0568 286 MobiDBLite consensus disorder prediction 258 286 - -
Lal10g0568 286 MobiDBLite consensus disorder prediction 261 286 - -
Lal10g0568 286 ProSitePatterns Zinc finger C2H2 type domain signature. 80 102 IPR013087 -
Lal10g0568 286 MobiDBLite consensus disorder prediction 1 82 - -
Lal10g0568 286 SUPERFAMILY beta-beta-alpha zinc fingers 76 113 IPR036236 -
Lal10g0568 286 PANTHER ZINC FINGER PROTEIN KNUCKLES 63 283 - -
Lal10g0568 286 MobiDBLite consensus disorder prediction 46 79 - -
Lal10g0568 286 MobiDBLite consensus disorder prediction 179 208 - -
Lal10g0568 286 MobiDBLite consensus disorder prediction 28 45 - -
Lal10g0568 286 MobiDBLite consensus disorder prediction 1 21 - -
Lal10g0568 286 Gene3D Classic Zinc Finger 64 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0568 Lal-Chr10 13307242 13308102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0568 79 189 C2H2 Transcription Factor Family AT5G10970 37.984 1.29e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal10g0568 zf-C2H2_6 1.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0568 - - lang:109342396 419.468