Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0548 ATGTATCATGCAAAGAAGTTTTCAGCGTCAACCATGGTGCCACATAAATCTCAAGGTAGTGTTGAACAACTTGAAAATGTTGTGGTTTCGGGTGGATCTGCCATAAAAAATGCCATACCAGCTGGGGGAAGTGGGAAGCAACGCTTACGATGGACATCAGATCTTCATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTGAGAGTGATGGGTGTGCCTGGGCTTACTATTTATCATGTTAAAAGCCATTTACAGAAGTATCGCCTTGCAAAGTACTTGCCTGAATCTTCAGTTGATGGTAAAGACTCTAAAGATGAGAAAAGGAATTCTGGAGACAGCGTTTCTGGTGCAGATTCTTCCCCGGGATTTCAAATCAATGACGCTCTAAGAATGCAGATGGAGGTTCAGAAACGTCTTCATGAACAGCTTGAGGTTCAACAACAGTTGCAAATGAGAATTGAAGCGCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAATTAGGTAGTACCTTGACAGTCACGGAAACACTGCCATCGTCCCATGATAAGCAAAATCATCCTCAGTCAGAGCCTTCTGAGTCTAGTGATGCCTTCGCAGGTGCTTTATCTCCACCGAAAAAACAGAAAATTGAGGATAGTTCAAAGGATGGCTCCACTGCTTCACGGGTACCAACAAATATTGCACAGAAGACTGATTGTAGTGGTGGTAAGCCGGATCCAAAATTGTATGAAGATGATGCTGGGTTTGGATTCGGTTTGGATACGGAAAAGGATTAA 819 0.4335 MYHAKKFSASTMVPHKSQGSVEQLENVVVSGGSAIKNAIPAGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESSVDGKDSKDEKRNSGDSVSGADSSPGFQINDALRMQMEVQKRLHEQLEVQQQLQMRIEAQGKYLQKIIEEQQKLGSTLTVTETLPSSHDKQNHPQSEPSESSDAFAGALSPPKKQKIEDSSKDGSTASRVPTNIAQKTDCSGGKPDPKLYEDDAGFGFGLDTEKD 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0548 272 MobiDBLite consensus disorder prediction 231 246 - -
Lal10g0548 272 MobiDBLite consensus disorder prediction 189 210 - -
Lal10g0548 272 SUPERFAMILY Homeodomain-like 45 100 IPR009057 -
Lal10g0548 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Lal10g0548 272 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 260 IPR044848 GO:0003700
Lal10g0548 272 Gene3D - 45 104 - -
Lal10g0548 272 PANTHER OS05G0491500 PROTEIN 2 260 - -
Lal10g0548 272 Pfam Myb-like DNA-binding domain 49 99 IPR001005 -
Lal10g0548 272 Pfam MYB-CC type transfactor, LHEQLE motif 135 180 IPR025756 -
Lal10g0548 272 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Lal10g0548 272 MobiDBLite consensus disorder prediction 107 123 - -
Lal10g0548 272 MobiDBLite consensus disorder prediction 251 272 - -
Lal10g0548 272 MobiDBLite consensus disorder prediction 107 134 - -
Lal10g0548 272 MobiDBLite consensus disorder prediction 189 272 - -
Lal10g0548 272 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0548 Lal-Chr10 13068942 13073240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0548 46 180 G2-like Transcription Factor Family AT4G13640 55.705 4.08e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal10g0548 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0548 - - gmx:100783132 405.601