Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0529 ATGGGGAGGCCTCCATGCTGTGACAAAGTTGGCATCAAGAAGGGTCCATGGACACCTGAAGAGGACATAATCCTTGTCTCTTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTTCCTACTAATACTGGGTTATCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTAAGGCCAGGAATCAAGAGAGGGAACTTCACTGCTCATGAGGAAGGAATGATTATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTACCTTCCACAAAGAACAGATAATGATATAAAGAATTATTGGAACACACATCTAAAGAAGAAGCTGAAGAAACTTCAAGTAAATTTGGACCCACACCTAGCATCAGATTCAACAACCACTTCTCAATACCCATCAAAGAGTTTTAATGACACTAAAAATCTAGATATCAGTAGCATCAATCATGCTCCATCCCTAAAGCCACCAATTCATGAGTCTCAGTCTCAGTCTTCAACATATGCTTCAAGCACAGAGAATATATCAAAGCTCTTAGAAGGTTGGATGAGATCTTCTCCAAAGCAGCCTCTGAAGGAAACACAAGAACAAGAACAAGAACAAGAACAAGAACAAGAAGAAGAAGAAGAAGAAGGGTTTCAAAGCAATGATGTTTCTGAAAACAGTAAGCAAGTGAAATATGCATCAGTGCCTTCTGTTTTGAACCTTCAGCTTCATCAGAAGCAGCACCGAACCAAAGATGAGCATGAGGGTGGTGGAGATATGGTTTCACATGAAGAGTTTGATTCTATTTTGTCATTTGAGAACTTAAACAATGCTCCTTGGGACAAGTCTACTTGTGATTCTATGCCTGAAAAGGGTTATGTAGTTGGTGCTGAGTTTGGAGAGAAGAATAGGTTAACATCTGAGAACACCAATGCTCCTCCATTGTCATTTCTTGAGAAGTGGCTTTTAGATGAAAATGTTGGTCATGTAGATGATATGATGGAATTATCACCTATGTTTTCCGAGCGAACATAG 1035 0.4029 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTAHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQVNLDPHLASDSTTTSQYPSKSFNDTKNLDISSINHAPSLKPPIHESQSQSSTYASSTENISKLLEGWMRSSPKQPLKETQEQEQEQEQEQEEEEEEGFQSNDVSENSKQVKYASVPSVLNLQLHQKQHRTKDEHEGGGDMVSHEEFDSILSFENLNNAPWDKSTCDSMPEKGYVVGAEFGEKNRLTSENTNAPPLSFLEKWLLDENVGHVDDMMELSPMFSERT 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0529 344 MobiDBLite consensus disorder prediction 127 177 - -
Lal10g0529 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lal10g0529 344 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal10g0529 344 CDD SANT 16 61 IPR001005 -
Lal10g0529 344 Gene3D - 68 141 - -
Lal10g0529 344 SMART sant 66 114 IPR001005 -
Lal10g0529 344 SMART sant 13 63 IPR001005 -
Lal10g0529 344 MobiDBLite consensus disorder prediction 191 230 - -
Lal10g0529 344 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal10g0529 344 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal10g0529 344 Coils Coil 196 221 - -
Lal10g0529 344 CDD SANT 69 111 IPR001005 -
Lal10g0529 344 PANTHER TRANSCRIPTION FACTOR MYB60 1 332 - -
Lal10g0529 344 Gene3D - 13 66 - -
Lal10g0529 344 MobiDBLite consensus disorder prediction 127 154 - -
Lal10g0529 344 MobiDBLite consensus disorder prediction 204 220 - -
Lal10g0529 344 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal10g0529 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 332 - -
Lal10g0529 344 MobiDBLite consensus disorder prediction 161 177 - -
Lal10g0529 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lal10g0529 344 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0529 Lal-Chr10 12724710 12726882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0529 1 143 MYB Transcription Factor Family AT5G62470 79.310 3.60e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal10g0529 Myb_DNA-binding 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0529 K09422 - gmx:100817854 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0842 25 7428897 7431267 Lal10g0529 10 12724710 12726882 LSH